Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF787_chr19_56082366_56126295	0/0	a0004	382	4	2	2	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	a0005	382	3	1	2	0	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	a0006	382	3	0	0	3	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	a0007	382	1	0	0	1	0	0	copy fasta	ZNF787	chr19	56082366	56126295
ZNF789_chr7_99467890_99492605	0/0	a0001	425	196	91	17	63	6	19	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	1/1	a0002	425	137	6	31	69	8	21	copy fasta	ZNF789	chr7	99467890	99492605
ZNF789_chr7_99467890_99492605	0/0	a0003	425	1	1	0	0	0	0	copy fasta	ZNF789	chr7	99467890	99492605
ZNF790_chr19_36812428_36843387	1/1	a0001	636	234	49	49	97	13	24	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0002	636	110	31	17	45	3	14	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0003	298	6	6	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0004	636	4	0	4	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0005	636	2	2	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0006	321	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0007	636	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0008	636	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF790_chr19_36812428_36843387	0/0	a0009	636	1	1	0	0	0	0	copy fasta	ZNF790	chr19	36812428	36843387
ZNF791_chr19_12605920_12638834	1/1	a0001	576	379	90	67	164	14	42	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	a0002	576	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	a0003	576	1	0	1	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF791_chr19_12605920_12638834	0/0	a0004	576	1	1	0	0	0	0	copy fasta	ZNF791	chr19	12605920	12638834
ZNF792_chr19_34951354_34969229	0/0	a0001	632	248	76	31	118	7	16	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	1/1	a0002	632	154	12	40	75	10	15	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0003	632	12	0	5	0	1	6	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0004	632	6	0	0	1	0	5	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0005	632	3	0	0	3	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0006	632	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0007	632	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0008	632	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0009	632	1	0	0	1	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0010	632	1	0	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	a0011	632	1	0	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF793_chr19_37501939_37548333	1/1	a0001	406	346	75	58	167	11	33	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0002	406	34	10	8	15	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0003	406	4	0	3	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0004	406	2	2	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0005	406	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0006	406	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0007	406	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	a0008	406	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF799_chr19_12385016_12406271	0/1	a0001	643	253	75	48	100	10	19	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	1/0	a0002	643	128	1	18	85	2	21	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0003	643	25	0	6	10	1	8	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0004	643	14	13	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0005	643	8	8	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0006	643	3	0	3	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0007	643	2	0	0	2	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0008	643	2	0	0	0	0	2	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0009	643	2	0	0	2	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0010	643	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0011	643	1	0	0	0	1	0	copy fasta	ZNF799	chr19	12385016	12406271