Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF804B_chr7_88754700_89343528	0/0	a0011	1349	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0012	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0013	1349	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0014	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0015	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0016	1349	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0017	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0018	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0019	1349	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0020	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0021	1349	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0022	1349	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF805_chr19_57235632_57267728	1/0	a0001	627	248	56	37	119	8	27	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/1	a0002	627	124	24	37	37	8	17	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0003	627	12	11	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0004	627	4	0	0	4	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0005	627	3	0	1	2	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0006	627	3	0	3	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0007	627	2	2	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0008	627	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0009	627	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0010	627	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	a0011	627	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF808_chr19_52522668_52561336	1/1	a0001	903	230	56	37	93	12	30	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0002	903	60	17	17	9	3	14	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0003	903	57	0	10	47	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0004	903	28	0	0	28	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0005	903	18	12	5	0	1	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0006	903	5	0	0	5	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0007	903	4	0	0	4	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0008	903	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0009	903	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0010	903	3	2	1	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0011	903	2	0	2	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0012	903	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0013	903	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0014	903	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0015	903	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0016	903	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0017	903	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0018	903	1	0	0	0	0	1	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0019	903	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0020	903	1	0	0	1	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0021	903	1	1	0	0	0	0	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	a0022	903	1	0	0	0	0	1	copy fasta	ZNF808	chr19	52522668	52561336
ZNF80_chr3_114229631_114242578	0/1	a0001	273	192	59	31	78	6	17	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	1/0	a0002	273	147	17	25	83	8	13	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0003	244	66	4	18	26	4	14	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0004	65	8	7	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0005	273	6	0	6	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578