Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACCS_chr11_44061270_44089237	0/1	a0002	501	111	25	17	53	7	8	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0003	501	75	18	8	42	3	4	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0004	501	30	20	1	6	0	3	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0005	501	8	6	0	2	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0006	501	4	4	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0007	501	3	3	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0008	501	2	0	0	2	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0009	501	2	2	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0010	501	1	1	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0011	501	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0012	501	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0013	501	1	0	0	0	1	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	a0014	501	1	1	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACD_chr16_67652512_67665260	0/0	a0001	458	154	79	31	23	4	17	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	1/1	a0002	458	108	3	20	62	6	15	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	a0003	458	3	3	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	a0004	458	1	1	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	a0005	458	1	0	1	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	a0006	458	1	0	0	1	0	0	copy fasta	ACD	chr16	67652512	67665260
ACE2_chrX_15556033_15605960	1/1	a0001	805	262	62	55	110	9	24	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	a0002	805	1	0	1	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	a0003	716	1	0	0	1	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACER1_chr19_6301142_6338612	1/1	a0001	264	307	96	60	101	9	39	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	a0002	264	85	0	10	63	3	9	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	a0003	264	1	0	0	1	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	a0004	264	1	0	1	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	a0005	264	1	0	0	1	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	a0006	264	1	0	1	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER2_chr9_19404009_19457505	1/1	a0001	275	323	90	61	116	18	36	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	a0002	275	24	0	2	22	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	a0003	275	7	6	1	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	a0004	275	2	2	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	a0005	275	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	a0006	275	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER3_chr11_76855918_77031797	0/1	a0001	267	214	61	40	86	11	15	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	1/0	a0002	267	131	33	28	49	5	15	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	a0003	267	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACE_chr17_63472061_63503373	1/1	a0001	1306	300	47	68	133	11	39	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0002	1306	22	20	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0003	1306	5	0	0	5	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0004	1306	5	5	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0005	1308	5	2	0	0	0	3	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0006	1306	4	4	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0007	1306	4	0	0	4	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0008	1306	3	3	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0009	1308	3	3	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0010	1306	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0011	1306	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0012	1306	2	0	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0013	1306	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373