Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACOX1_chr17_75936507_75984166	0/0	a0009	660	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX2_chr3_58500136_58542190	1/1	a0001	681	351	87	73	134	14	41	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0002	681	3	0	0	3	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0003	681	3	2	0	1	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0004	681	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0005	260	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0006	681	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0007	681	1	0	1	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0008	681	1	0	0	0	0	1	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0009	681	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	a0010	681	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX3_chr4_8361282_8445723	1/1	a0001	700	364	90	60	157	13	42	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0002	700	7	5	2	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0003	700	2	1	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0004	700	1	0	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0005	700	1	0	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0006	700	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0007	700	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0008	700	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0009	700	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	a0010	700	1	0	0	0	1	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOXL_chr2_110727573_111123548	0/0	a0000	0	2	2	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	1/0	a0001	580	93	40	16	22	6	8	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/1	a0002	580	21	6	6	7	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0003	580	10	0	2	8	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0004	567	8	7	1	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0005	580	3	1	1	1	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0006	580	3	3	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0007	580	2	0	0	0	1	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0008	567	2	2	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0009	580	1	0	0	0	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0010	576	1	0	0	0	1	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0011	580	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0012	580	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0013	580	1	0	0	0	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	a0014	580	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACP1_chr2_259947_283283	1/1	a0001	158	286	68	55	119	11	31	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	a0002	158	100	22	17	41	7	13	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	a0003	158	2	0	2	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	a0004	158	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	a0005	158	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP2_chr11_47234302_47253814	0/1	a0001	423	194	56	29	83	5	20	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	1/0	a0002	423	159	34	44	49	9	22	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	a0003	423	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	a0004	423	1	0	1	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	a0005	423	1	0	0	1	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	a0006	423	1	0	0	1	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	a0007	423	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP3_chr3_132312407_132363841	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	1/1	a0001	386	357	85	72	142	12	44	copy fasta	ACP3	chr3	132312407	132363841