JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CBL_chr11_119201339_119313149	1/1	a0001	906	350	94	56	151	11	36	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0002	906	7	0	0	7	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0003	906	2	2	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0004	906	1	0	0	1	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0005	906	1	0	0	1	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0006	906	1	1	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0007	906	1	0	0	0	1	0	copy fasta	CBL	chr11	119201339	119313149
CBL_chr11_119201339_119313149	0/0	a0008	906	1	1	0	0	0	0	copy fasta	CBL	chr11	119201339	119313149
CBR1_chr21_36065024_36078164	1/1	a0001	277	425	93	76	193	16	45	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	a0002	277	3	0	0	3	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	a0003	277	1	0	0	0	0	1	copy fasta	CBR1	chr21	36065024	36078164
CBR1_chr21_36065024_36078164	0/0	a0004	277	1	1	0	0	0	0	copy fasta	CBR1	chr21	36065024	36078164
CBR3_chr21_36130079_36151562	0/1	a0001	277	179	25	38	93	8	14	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0002	277	138	30	17	68	5	18	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	1/0	a0003	277	68	11	15	31	2	8	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0004	277	19	17	2	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0005	277	17	12	4	0	1	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0006	277	1	1	0	0	0	0	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0007	277	1	0	0	0	0	1	copy fasta	CBR3	chr21	36130079	36151562
CBR3_chr21_36130079_36151562	0/0	a0008	277	1	0	0	0	0	1	copy fasta	CBR3	chr21	36130079	36151562
CBR4_chr4_168982590_169015255	0/0	a0001	237	187	32	38	83	11	23	copy fasta	CBR4	chr4	168982590	169015255
CBR4_chr4_168982590_169015255	1/1	a0002	237	97	52	22	7	5	9	copy fasta	CBR4	chr4	168982590	169015255
CBS_chr21_43048191_43080835	0/0	a0001	551	244	38	47	120	6	33	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0002	292	40	29	8	0	2	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0003	551	5	5	0	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0004	551	3	0	0	3	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0005	551	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0006	551	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0007	551	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0008	292	1	0	0	0	0	1	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0009	551	1	0	1	0	0	0	copy fasta	CBS	chr21	43048191	43080835
CBS_chr21_43048191_43080835	0/0	a0010	551	1	0	0	1	0	0	copy fasta	CBS	chr21	43048191	43080835
CBX1_chr17_48065059_48106478	1/1	a0001	185	396	90	68	178	18	40	copy fasta	CBX1	chr17	48065059	48106478
CBX2_chr17_79773148_79792983	1/1	a0001	532	425	73	78	204	18	50	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0002	532	26	24	2	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0003	532	8	0	4	4	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0004	532	3	2	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0005	532	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0006	532	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0007	532	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	a0008	532	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX3_chr7_26196745_26218607	1/1	a0001	183	410	94	66	200	10	38	copy fasta	CBX3	chr7	26196745	26218607
CBX4_chr17_79828156_79844440	0/0	a0000	0	34	6	8	19	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	1/1	a0001	560	343	78	56	161	10	36	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0002	562	22	5	8	0	2	7	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0003	561	15	2	4	2	2	5	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0004	557	3	0	0	3	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0005	562	1	1	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0006	560	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	a0007	563	1	0	0	0	0	1	copy fasta	CBX4	chr17	79828156	79844440