JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC120_chrX_49053999_49074854	0/0	a0007	696	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC121_chr2_27620638_27634012	1/1	a0001	278	376	84	66	170	16	38	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	a0002	69	7	0	0	7	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	a0003	278	1	0	0	1	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC122_chr13_43831352_43884740	1/1	a0001	273	391	88	64	191	10	36	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0002	273	30	1	2	20	0	7	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0003	273	11	0	0	11	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0004	273	7	0	2	0	2	3	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0005	273	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0006	250	1	1	0	0	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC122_chr13_43831352_43884740	0/0	a0007	273	1	0	0	1	0	0	copy fasta	CCDC122	chr13	43831352	43884740
CCDC124_chr19_17928015_17948985	1/1	a0001	223	408	93	83	172	13	45	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	a0002	223	7	7	0	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	a0003	223	2	0	0	2	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	a0004	223	2	0	0	0	1	1	copy fasta	CCDC124	chr19	17928015	17948985
CCDC124_chr19_17928015_17948985	0/0	a0005	223	1	0	1	0	0	0	copy fasta	CCDC124	chr19	17928015	17948985
CCDC125_chr5_69275175_69337801	0/1	a0001	511	262	78	50	103	5	25	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	a0002	511	74	8	17	37	3	9	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	a0003	96	2	0	2	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	a0004	511	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	a0005	511	1	0	1	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC125_chr5_69275175_69337801	0/0	a0006	511	1	1	0	0	0	0	copy fasta	CCDC125	chr5	69275175	69337801
CCDC126_chr7_23592382_23649708	1/1	a0001	140	377	92	74	155	12	42	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	a0002	140	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	a0003	140	1	1	0	0	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC126_chr7_23592382_23649708	0/0	a0004	147	1	0	0	1	0	0	copy fasta	CCDC126	chr7	23592382	23649708
CCDC127_chr5_191868_223153	1/1	a0001	260	394	71	80	186	12	43	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0002	260	7	7	0	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0003	260	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0004	260	1	0	0	1	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0005	260	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0006	260	1	0	0	0	0	1	copy fasta	CCDC127	chr5	191868	223153
CCDC127_chr5_191868_223153	0/0	a0007	260	1	0	1	0	0	0	copy fasta	CCDC127	chr5	191868	223153
CCDC12_chr3_46916730_46981745	1/1	a0001	166	349	87	69	144	10	37	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	0/0	a0002	166	4	1	3	0	0	0	copy fasta	CCDC12	chr3	46916730	46981745
CCDC12_chr3_46916730_46981745	0/0	a0003	166	1	0	0	0	0	1	copy fasta	CCDC12	chr3	46916730	46981745
CCDC134_chr22_41795679_41837164	1/1	a0001	229	370	83	64	165	14	42	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	a0002	229	6	6	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	a0003	216	2	0	2	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	a0004	229	1	0	0	1	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC134_chr22_41795679_41837164	0/0	a0005	229	1	1	0	0	0	0	copy fasta	CCDC134	chr22	41795679	41837164
CCDC136_chr7_128786968_128827130	0/1	a0001	1154	335	71	52	164	12	35	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0002	1154	19	3	1	15	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0003	1154	9	8	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0004	1152	4	0	0	4	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	1/0	a0005	1154	2	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0006	1154	2	0	0	0	0	2	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0007	1154	1	0	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0008	1154	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	a0009	1154	1	0	0	0	1	0	copy fasta	CCDC136	chr7	128786968	128827130