JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC68_chr18_54896509_54964461	1/1	a0001	335	307	80	56	113	13	43	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0002	335	11	7	3	0	0	1	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0003	335	3	0	2	0	1	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0004	335	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0005	335	1	1	0	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0006	335	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0007	335	1	0	1	0	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC68_chr18_54896509_54964461	0/0	a0008	335	1	0	0	1	0	0	copy fasta	CCDC68	chr18	54896509	54964461
CCDC69_chr5_151176052_151229092	1/1	a0001	296	235	41	40	114	11	27	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0002	296	157	33	29	71	7	17	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0003	296	10	9	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0004	296	8	8	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0005	296	6	3	3	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0006	296	3	0	0	3	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0007	296	3	3	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0008	296	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0009	296	1	1	0	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0010	296	1	0	1	0	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC69_chr5_151176052_151229092	0/0	a0011	296	1	0	0	1	0	0	copy fasta	CCDC69	chr5	151176052	151229092
CCDC6_chr10_59783747_59911556	1/0	a0001	474	184	72	22	63	8	18	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/1	a0002	474	99	16	27	39	5	11	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	a0003	474	3	0	3	0	0	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	a0004	474	1	0	0	0	1	0	copy fasta	CCDC6	chr10	59783747	59911556
CCDC6_chr10_59783747_59911556	0/0	a0005	474	1	0	0	0	0	1	copy fasta	CCDC6	chr10	59783747	59911556
CCDC70_chr13_51856969_51871232	1/0	a0001	222	220	55	35	93	10	26	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/1	a0002	222	184	27	38	95	8	15	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	a0003	222	23	13	5	2	0	3	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	a0004	222	2	0	0	2	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC70_chr13_51856969_51871232	0/0	a0005	222	1	1	0	0	0	0	copy fasta	CCDC70	chr13	51856969	51871232
CCDC71L_chr7_106649360_106666158	1/1	a0001	235	437	94	86	195	18	42	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	a0002	235	2	2	0	0	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71L_chr7_106649360_106666158	0/0	a0003	235	1	0	0	1	0	0	copy fasta	CCDC71L	chr7	106649360	106666158
CCDC71_chr3_49157535_49171331	0/0	a0001	467	146	39	30	48	4	25	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	1/1	a0002	467	79	32	16	15	8	6	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	a0003	467	14	14	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	a0004	467	1	1	0	0	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	a0005	467	1	0	0	0	0	1	copy fasta	CCDC71	chr3	49157535	49171331
CCDC71_chr3_49157535_49171331	0/0	a0006	467	1	0	0	1	0	0	copy fasta	CCDC71	chr3	49157535	49171331
CCDC73_chr11_32597721_32799662	1/1	a0001	1079	308	96	65	92	11	42	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	a0002	1079	1	0	0	0	0	1	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	a0003	1079	1	0	1	0	0	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	a0004	1079	1	0	0	0	1	0	copy fasta	CCDC73	chr11	32597721	32799662
CCDC73_chr11_32597721_32799662	0/0	a0005	1079	1	0	0	0	0	1	copy fasta	CCDC73	chr11	32597721	32799662
CCDC74A_chr2_131522888_131538666	0/0	a0001	312	213	26	34	135	4	14	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	1/1	a0002	312	172	36	35	57	11	31	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0003	312	25	15	7	0	0	3	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0004	312	7	7	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0005	312	6	1	0	2	1	2	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0006	312	6	3	3	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0007	312	3	0	0	3	0	0	copy fasta	CCDC74A	chr2	131522888	131538666