Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACSS1_chr20_25001237_25063139	0/0	a0010	689	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0011	689	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0012	689	1	0	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0013	689	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS2_chr20_34871612_34932959	1/1	a0001	701	288	68	48	126	16	28	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0002	701	9	9	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0003	701	8	4	4	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0004	701	2	2	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0005	701	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0006	701	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0007	701	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0008	701	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	a0009	701	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS3_chr12_81073079_81266210	1/1	a0001	686	257	53	48	116	8	30	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	a0002	686	30	16	0	14	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	a0003	686	2	0	0	2	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	a0004	686	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	1/1	a0001	377	450	96	86	206	18	42	copy fasta	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	1/1	a0001	377	402	94	64	188	16	38	copy fasta	ACTA2	chr10	88930074	88957773
ACTBL2_chr5_57475018_57487811	1/1	a0001	376	424	79	80	204	18	41	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0002	376	9	9	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0003	376	5	5	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0004	376	3	3	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0005	376	2	0	0	0	0	2	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0006	376	1	0	1	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0007	376	1	0	1	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0008	376	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0009	376	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	a0010	376	1	0	0	0	0	1	copy fasta	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	1/1	a0001	375	370	92	76	136	16	48	copy fasta	ACTB	chr7	5522148	5535601
ACTC1_chr15_34785230_34800549	1/1	a0001	377	496	100	84	244	18	48	copy fasta	ACTC1	chr15	34785230	34800549
ACTG1_chr17_81504971_81517799	1/1	a0001	375	370	92	74	136	16	50	copy fasta	ACTG1	chr17	81504971	81517799
ACTG2_chr2_73888008_73924865	1/1	a0001	376	415	96	67	192	14	44	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	a0002	376	1	0	1	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTL10_chr20_33661943_33673525	1/1	a0001	245	364	97	66	141	16	42	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	a0002	245	2	2	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	a0003	245	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	a0004	245	1	0	0	1	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL6A_chr3_179557926_179593407	1/1	a0001	429	377	90	70	168	11	36	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	a0002	429	1	0	0	0	1	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	a0003	429	1	0	1	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	a0004	429	1	0	1	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6B_chr7_100638097_100661448	1/1	a0001	426	359	88	66	147	12	44	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	a0002	426	1	0	0	1	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL7A_chr9_108857266_108868756	1/1	a0001	435	436	80	79	216	18	41	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0002	435	23	5	1	10	0	7	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0003	435	16	14	2	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0004	435	3	0	0	3	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0005	435	1	1	0	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0006	435	1	0	1	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756