JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD33_chr19_51220080_51245016	0/0	a0024	364	1	0	0	0	0	1	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0025	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD34_chr1_207875972_207916125	1/1	a0001	385	398	90	72	178	16	40	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	a0002	385	9	0	2	5	0	2	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	a0003	385	8	0	0	8	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	a0004	385	3	0	0	3	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	a0005	385	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	a0006	385	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD36_chr7_80633642_80684274	0/0	a0000	0	3	1	1	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	1/1	a0001	472	366	80	66	167	14	37	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0002	324	11	11	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0003	472	4	0	0	4	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0004	411	2	0	0	2	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0005	468	2	0	0	2	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0006	472	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0007	472	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0008	472	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	a0009	472	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD37_chr19_49330406_49345606	1/1	a0001	281	377	90	68	170	8	39	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	a0002	281	1	0	0	1	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	a0003	281	1	0	0	0	0	1	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	a0004	281	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	a0005	281	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	a0006	281	1	0	0	1	0	0	copy fasta	CD37	chr19	49330406	49345606
CD38_chr4_15773328_15858232	1/1	a0001	300	341	76	66	149	12	36	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	a0002	300	3	0	0	3	0	0	copy fasta	CD38	chr4	15773328	15858232
CD3D_chr11_118334075_118347705	1/1	a0001	171	432	88	78	198	16	50	copy fasta	CD3D	chr11	118334075	118347705
CD3E_chr11_118299730_118321173	1/1	a0001	207	409	93	73	187	14	40	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	a0002	207	2	1	1	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	a0003	207	2	2	0	0	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	a0004	207	2	0	0	0	0	2	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	a0005	207	1	0	0	1	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3G_chr11_118339344_118360161	1/1	a0001	182	299	82	73	104	15	23	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	a0002	182	140	10	9	93	1	27	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	a0003	182	2	2	0	0	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD3G_chr11_118339344_118360161	0/0	a0004	182	1	0	0	1	0	0	copy fasta	CD3G	chr11	118339344	118360161
CD40LG_chrX_136643158_136665390	1/1	a0001	261	283	76	53	111	12	29	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	a0002	261	2	0	0	1	0	1	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	a0003	261	1	0	0	0	1	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40LG_chrX_136643158_136665390	0/0	a0004	126	1	0	0	1	0	0	copy fasta	CD40LG	chrX	136643158	136665390
CD40_chr20_46113314_46134858	1/1	a0001	277	393	79	63	185	18	46	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	a0002	277	10	10	0	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	a0003	277	10	1	9	0	0	0	copy fasta	CD40	chr20	46113314	46134858
CD40_chr20_46113314_46134858	0/0	a0004	277	3	0	0	3	0	0	copy fasta	CD40	chr20	46113314	46134858
CD44_chr11_35134171_35237402	0/1	a0001	742	321	79	44	160	7	30	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	a0002	742	37	7	17	9	1	3	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	1/0	a0003	742	9	0	7	0	1	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	a0004	742	4	4	0	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	a0005	742	4	0	3	0	1	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	a0006	742	1	0	0	0	0	1	copy fasta	CD44	chr11	35134171	35237402