Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACTL7A_chr9_108857266_108868756	0/0	a0007	435	1	0	1	0	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	a0008	435	1	0	0	1	0	0	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7B_chr9_108849588_108860986	1/1	a0001	415	438	84	77	217	15	43	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0002	408	20	5	9	0	3	3	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0003	415	8	8	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0004	415	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0005	415	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0006	415	1	0	0	1	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	a0007	415	1	1	0	0	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL8_chr1_17750333_17832063	1/1	a0001	366	246	76	43	91	10	24	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0002	366	110	10	19	70	4	7	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0003	366	6	0	0	6	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0004	366	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0005	366	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0006	366	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	a0007	366	1	0	0	0	0	1	copy fasta	ACTL8	chr1	17750333	17832063
ACTL9_chr19_8692400_8703795	1/1	a0001	416	207	50	40	80	9	26	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0002	416	78	21	13	33	1	10	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0003	416	64	11	17	22	5	9	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0004	416	2	0	2	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0005	416	1	0	0	0	1	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0006	416	1	0	0	0	0	1	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0007	416	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0008	416	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	a0009	416	1	0	0	1	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTMAP_chr19_40735861_40755477	0/0	a0001	351	320	84	56	141	13	26	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	1/1	a0002	351	101	12	19	55	3	10	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	a0003	351	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	a0004	351	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	a0005	351	1	0	1	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	a0006	351	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	a0007	351	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTN1_chr14_68869128_68984302	1/1	a0001	914	276	92	57	78	13	34	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	a0002	914	2	0	0	2	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	a0003	914	2	1	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	a0004	914	2	0	1	0	1	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	a0005	914	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	a0006	914	1	0	1	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN2_chr1_236681499_236769631	1/1	a0001	894	320	88	61	121	12	36	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0002	894	16	0	0	16	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0003	894	2	2	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0004	894	2	1	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0005	57	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0006	894	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0007	894	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	a0008	894	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN3_chr11_66541903_66568334	0/1	a0001	901	156	50	21	65	9	10	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0002	576	147	14	28	87	1	17	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0003	901	65	15	9	31	2	8	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0004	901	7	7	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334