Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AARS2_chr6_44293731_44318347	0/0	a0003	985	5	5	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0004	985	5	4	1	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0005	985	4	4	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0006	985	4	0	1	0	3	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0007	985	2	0	0	0	0	2	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0008	985	2	2	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0009	985	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0010	985	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0011	985	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0012	985	1	1	0	0	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0013	985	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	0/0	a0014	985	1	0	0	1	0	0	copy fasta	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	1/1	a0001	412	312	85	57	115	12	41	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0002	412	3	0	0	3	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0003	412	3	0	0	3	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0004	412	2	1	1	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0005	412	1	1	0	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0006	412	1	0	0	0	0	1	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0007	412	1	1	0	0	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	0/0	a0008	412	1	0	0	1	0	0	copy fasta	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	1/1	a0001	309	403	91	66	194	12	38	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	0/0	a0002	309	1	1	0	0	0	0	copy fasta	AASDHPPT	chr11	106072662	106103695
AASDH_chr4_56333290_56392491	1/0	a0001	1098	130	26	16	73	8	6	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0002	1098	92	16	19	50	2	5	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/1	a0003	1098	77	25	24	6	6	15	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0004	1098	54	2	0	44	0	8	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0005	1097	8	8	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0006	1098	4	3	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0007	1098	4	4	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0008	1098	2	0	0	2	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0009	1098	2	0	1	0	0	1	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0010	145	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0011	1098	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0012	1098	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0013	1098	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0014	1098	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0015	1098	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0016	1098	1	0	0	0	0	1	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0017	1098	1	0	0	1	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	0/0	a0018	1098	1	1	0	0	0	0	copy fasta	AASDH	chr4	56333290	56392491
AASS_chr7_122068549_122149249	1/1	a0001	926	368	81	74	164	11	36	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0002	926	4	4	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0003	926	3	0	0	3	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0004	926	2	2	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0005	926	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0006	926	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0007	926	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0008	926	1	0	0	1	0	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0009	926	1	0	0	0	1	0	copy fasta	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	0/0	a0010	926	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249