JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEL_chr9_133056981_133076861	0/0	a0061	674	1	0	1	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0062	742	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0063	676	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0064	698	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0065	652	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0066	652	1	1	0	0	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0067	619	1	0	0	0	0	1	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0068	663	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEL_chr9_133056981_133076861	0/0	a0069	14	1	0	0	1	0	0	copy fasta	CEL	chr9	133056981	133076861
CEMIP2_chr9_71678366_71773513	1/1	a0001	1383	144	44	23	54	5	16	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0002	1383	52	18	11	17	2	4	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0003	1383	25	3	9	12	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0004	1383	25	0	9	10	2	4	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0005	1383	21	2	6	5	1	7	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0006	1383	19	9	1	9	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0007	1383	14	9	2	3	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0008	1383	7	0	1	6	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0009	1383	3	1	0	1	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0010	1383	2	0	0	2	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0011	1383	2	0	1	0	0	1	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0012	1383	1	0	0	1	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0013	1383	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0014	1383	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0015	1383	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0016	1383	1	1	0	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP2_chr9_71678366_71773513	0/0	a0017	1383	1	0	1	0	0	0	copy fasta	CEMIP2	chr9	71678366	71773513
CEMIP_chr15_80774370_80956771	1/1	a0001	1361	230	87	42	66	7	26	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0002	1361	8	0	0	8	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0003	1360	3	0	2	0	0	1	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0004	1361	2	0	0	2	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0005	1361	2	0	0	2	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0006	1361	2	0	1	0	0	1	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0007	1361	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0008	1361	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0009	1361	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0010	1361	1	1	0	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0011	1361	1	0	0	1	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0012	1361	1	0	0	0	1	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMIP_chr15_80774370_80956771	0/0	a0013	1361	1	0	1	0	0	0	copy fasta	CEMIP	chr15	80774370	80956771
CEMP1_chr16_2525035_2536408	1/1	a0001	247	317	61	68	143	8	35	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	a0002	247	27	27	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	a0003	247	1	1	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	a0004	182	1	1	0	0	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	a0005	243	1	0	0	1	0	0	copy fasta	CEMP1	chr16	2525035	2536408
CEMP1_chr16_2525035_2536408	0/0	a0006	247	1	0	0	0	0	1	copy fasta	CEMP1	chr16	2525035	2536408
CENATAC_chr11_118993138_119020793	1/1	a0001	332	315	91	70	116	10	26	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	a0002	332	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	a0003	332	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CENATAC_chr11_118993138_119020793	0/0	a0004	332	1	1	0	0	0	0	copy fasta	CENATAC	chr11	118993138	119020793
CEND1_chr11_782115_795090	1/1	a0001	149	410	97	77	180	14	40	copy fasta	CEND1	chr11	782115	795090