JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP55_chr10_93491612_93534092	0/0	a0020	464	1	0	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP57L1_chr6_109090507_109179418	1/1	a0001	460	180	69	29	55	3	22	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0002	460	37	11	9	7	3	7	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0003	460	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0004	460	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0005	460	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0006	153	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	a0007	460	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57_chr11_95785498_95837693	1/0	a0001	500	247	79	40	86	11	30	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/1	a0002	500	89	10	14	53	5	6	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	a0003	500	1	0	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	a0004	361	1	0	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	a0005	500	1	0	0	1	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	a0006	500	1	1	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP63_chr3_134481057_134570031	1/0	a0001	703	230	80	34	75	9	31	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/1	a0002	703	85	4	18	52	4	6	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0003	703	2	1	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0004	703	1	0	0	0	1	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0005	703	1	0	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0006	703	1	0	0	0	0	1	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0007	703	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	a0008	703	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP68_chr2_65051416_65092004	1/0	a0001	757	190	48	33	85	4	19	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0002	757	54	0	7	45	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/1	a0003	757	42	1	6	23	3	8	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0004	757	29	28	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0005	756	19	8	5	0	2	4	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0006	756	5	5	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0007	757	5	0	4	0	1	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0008	757	2	0	2	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0009	757	2	0	0	2	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0010	757	2	2	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0011	757	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0012	757	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0013	757	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0014	757	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0015	757	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0016	757	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0017	757	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0018	757	1	0	0	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0019	757	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	a0020	757	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP70_chr3_138489344_138599260	0/0	a0001	597	118	16	23	59	5	15	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/1	a0002	597	105	34	6	54	0	10	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	1/0	a0003	597	89	31	19	13	9	16	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	a0004	597	3	2	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	a0005	597	1	0	0	0	0	1	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	a0006	597	1	0	1	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP70_chr3_138489344_138599260	0/0	a0007	597	1	1	0	0	0	0	copy fasta	CEP70	chr3	138489344	138599260
CEP72_chr5_607340_658553	1/0	a0001	647	64	5	18	23	5	12	copy fasta	CEP72	chr5	607340	658553