JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CEP72_chr5_607340_658553	0/0	a0002	647	18	0	6	2	1	9	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	a0003	647	6	3	2	1	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	a0004	647	2	0	0	2	0	0	copy fasta	CEP72	chr5	607340	658553
CEP72_chr5_607340_658553	0/0	a0005	647	1	0	0	0	0	1	copy fasta	CEP72	chr5	607340	658553
CEP76_chr18_12667625_12707723	1/1	a0001	659	365	88	67	154	12	42	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	a0002	659	11	0	3	8	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	a0003	659	1	0	0	1	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	a0004	659	1	0	0	1	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	a0005	659	1	1	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP76_chr18_12667625_12707723	0/0	a0006	659	1	1	0	0	0	0	copy fasta	CEP76	chr18	12667625	12707723
CEP78_chr9_78231075_78284690	1/1	a0001	705	335	84	72	127	14	36	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	a0002	705	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	a0003	705	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	a0004	705	1	0	0	1	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	a0005	705	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP78_chr9_78231075_78284690	0/0	a0006	705	1	1	0	0	0	0	copy fasta	CEP78	chr9	78231075	78284690
CEP83_chr12_94302698_94464867	1/1	a0001	701	292	78	55	125	8	24	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0002	701	57	0	7	44	0	6	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0003	701	7	0	3	0	2	2	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0004	701	3	3	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0005	701	2	2	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0006	701	1	1	0	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0007	701	1	0	0	1	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP83_chr12_94302698_94464867	0/0	a0008	701	1	0	1	0	0	0	copy fasta	CEP83	chr12	94302698	94464867
CEP85L_chr6_118455772_118656591	1/0	a0001	805	115	19	26	53	6	10	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/1	a0002	805	98	33	15	31	2	16	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0003	805	42	0	24	10	4	4	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0004	805	14	10	2	0	0	2	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0005	805	11	8	1	2	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0006	805	9	9	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0007	805	8	8	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0008	805	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0009	805	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0010	805	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0011	805	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	a0012	805	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85_chr1_26229200_26283808	1/1	a0001	761	226	56	42	95	6	25	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0002	761	73	4	17	43	4	5	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0003	761	28	12	4	1	6	5	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0004	761	7	6	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0005	761	3	3	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0006	761	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0007	761	1	0	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0008	761	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0009	761	1	0	0	1	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	a0010	761	1	0	0	0	0	1	copy fasta	CEP85	chr1	26229200	26283808
CEP89_chr19_32870925_32976958	0/0	a0000	0	49	6	12	14	5	12	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0001	783	126	17	21	79	2	7	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	a0002	783	90	18	9	52	3	8	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	1/0	a0003	783	72	19	17	21	3	11	copy fasta	CEP89	chr19	32870925	32976958