Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAM28_chr8_24289069_24364014	0/0	a0018	775	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0019	775	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0020	775	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	a0021	775	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM29_chr4_174913358_174983180	1/1	a0001	820	205	47	46	74	5	31	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0002	838	55	5	13	30	1	6	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0003	820	32	0	1	26	0	5	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0004	820	26	22	4	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0005	820	6	6	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0006	820	2	0	2	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0007	820	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0008	820	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0009	741	1	0	0	1	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	a0010	820	1	0	0	1	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM2_chr8_39738735_39843227	0/1	a0001	735	303	82	59	121	12	28	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0002	735	7	7	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0003	735	4	0	0	4	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0004	735	2	0	1	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0005	735	2	0	0	0	2	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0006	735	2	2	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0007	735	2	2	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0008	735	2	0	0	2	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0009	735	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0010	735	1	1	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0011	735	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0012	305	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	a0013	735	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM30_chr1_119888533_119901515	1/1	a0001	790	318	59	68	149	16	24	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0002	790	50	27	5	6	0	12	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0003	790	15	8	4	1	2	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0004	790	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0005	790	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0006	790	1	0	1	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0007	799	1	1	0	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	a0008	790	1	1	0	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM32_chr8_39102734_39289917	0/1	a0001	787	199	16	55	97	12	18	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0002	787	30	24	1	5	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0003	787	10	10	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0004	787	4	4	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0005	787	4	4	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0006	787	3	3	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0007	787	2	2	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0008	787	1	0	1	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0009	787	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0010	787	1	0	1	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0011	787	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	a0012	787	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM33_chr20_3662975_3687010	0/0	a0000	0	46	9	10	23	0	4	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	1/1	a0001	813	293	38	57	158	9	29	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	a0002	813	48	9	4	22	5	8	copy fasta	ADAM33	chr20	3662975	3687010