JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLK1_chr2_200848009_200869658	1/1	a0001	484	417	95	72	184	18	46	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	a0002	484	1	1	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK2_chr1_155257868_155278504	0/1	a0001	499	326	90	42	137	14	42	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	a0002	499	1	0	0	1	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	a0003	499	1	0	0	0	0	1	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	a0004	499	1	0	1	0	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	a0005	499	1	0	1	0	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	a0006	499	1	0	0	0	0	1	copy fasta	CLK2	chr1	155257868	155278504
CLK3_chr15_74610836_74635201	1/1	a0001	490	354	80	56	170	14	32	copy fasta	CLK3	chr15	74610836	74635201
CLK4_chr5_178597664_178632050	1/1	a0001	481	383	98	68	164	12	39	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	a0002	481	1	0	0	0	0	1	copy fasta	CLK4	chr5	178597664	178632050
CLMN_chr14_95176940_95324908	1/1	a0001	1002	244	62	55	77	12	36	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0002	1002	11	11	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0003	1002	7	6	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0004	1002	6	5	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0005	432	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0006	1002	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0007	1002	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0008	1002	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0009	1002	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0010	1002	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0011	1002	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	a0012	1002	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMP_chr11_123064872_123200248	1/1	a0001	373	237	84	53	61	12	25	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	a0002	373	17	0	3	11	0	3	copy fasta	CLMP	chr11	123064872	123200248
CLN3_chr16_28472279_28497074	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	1/1	a0001	438	289	56	55	127	10	39	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	a0002	438	57	30	3	21	0	3	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	a0003	438	8	0	1	7	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	a0004	438	4	4	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	a0005	438	1	0	1	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN5_chr13_76987081_77010117	1/1	a0001	358	283	49	52	135	12	33	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	a0002	358	144	45	21	73	2	3	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	a0003	358	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	a0004	358	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	a0005	358	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN6_chr15_68201992_68234728	1/1	a0001	311	315	94	59	115	11	34	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0002	311	3	0	0	0	0	3	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0003	311	2	0	1	0	1	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0004	311	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0005	311	1	0	0	0	0	1	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0006	311	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	a0007	311	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN8_chr8_1758789_1791570	0/1	a0001	286	399	85	65	183	18	47	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0002	286	5	0	5	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0003	286	3	3	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0004	286	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0005	286	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0006	286	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	a0007	286	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570