JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLN8_chr8_1758789_1791570	0/0	a0008	286	1	0	0	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLNK_chr4_10481395_10689768	1/1	a0001	428	289	78	47	123	12	27	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0002	428	12	2	0	10	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0003	428	9	2	3	0	2	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0004	428	4	0	4	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0005	428	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0006	428	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0007	428	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0008	428	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	a0009	428	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNS1A_chr11_77609530_77642794	1/1	a0001	237	406	90	74	184	16	40	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	a0002	237	2	0	0	2	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLOCK_chr4_55422903_55551909	1/1	a0001	846	298	64	56	131	10	35	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0002	846	32	31	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0003	846	2	0	1	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0004	846	2	0	0	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0005	846	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0006	846	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0007	846	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	a0008	846	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLP1_chr11_57652762_57666865	1/1	a0001	425	331	94	68	107	16	44	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	a0002	425	1	0	0	1	0	0	copy fasta	CLP1	chr11	57652762	57666865
CLPB_chr11_72280495_72439531	1/1	a0001	707	192	70	37	67	8	8	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0002	707	8	8	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0003	707	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0004	707	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0005	707	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0006	707	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0007	707	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	a0008	707	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPP_chr19_6356531_6375242	1/1	a0001	277	380	92	74	160	14	38	copy fasta	CLPP	chr19	6356531	6375242
CLPSL1_chr6_35776019_35793150	1/0	a0001	121	330	69	58	150	14	38	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/1	a0002	121	113	25	21	54	2	10	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	a0003	121	1	0	1	0	0	0	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL2_chr6_35771598_35784552	1/1	a0001	100	449	95	79	209	17	47	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	a0002	100	6	0	0	2	1	3	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	a0003	100	3	0	3	0	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	a0004	100	1	1	0	0	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	a0005	100	1	0	0	1	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPS_chr6_35789982_35802323	1/1	a0001	112	413	93	79	183	15	41	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	a0002	112	2	1	1	0	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	a0003	112	1	0	0	1	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	a0004	112	1	0	0	0	0	1	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	a0005	112	1	0	0	0	1	0	copy fasta	CLPS	chr6	35789982	35802323
CLPTM1L_chr5_1312752_1350099	1/1	a0001	538	362	94	76	142	10	38	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	a0002	538	4	0	1	0	0	3	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	a0003	538	1	0	1	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	a0004	538	1	0	0	0	0	1	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	a0005	538	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	a0006	538	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099