Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AASS_chr7_122068549_122149249	0/0	a0011	926	1	1	0	0	0	0	copy fasta	AASS	chr7	122068549	122149249
AATF_chr17_36943954_37061871	0/1	a0001	560	233	78	43	80	8	23	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	a0002	560	5	2	0	2	0	1	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	a0003	560	4	4	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	a0004	560	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	a0005	560	1	0	1	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	0/0	a0006	560	1	1	0	0	0	0	copy fasta	AATF	chr17	36943954	37061871
AATK_chr17_81112295_81171221	1/0	a0001	1374	104	13	17	57	5	11	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/1	a0002	1374	76	3	10	47	6	9	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0003	1374	71	10	26	23	1	11	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0004	1374	20	3	4	4	2	7	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0005	1374	18	16	1	0	1	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0006	1376	14	9	0	2	1	2	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0007	1374	11	4	3	3	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0008	1374	7	6	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0009	1374	6	4	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0010	1374	4	2	1	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0011	1374	3	0	2	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0012	1376	3	0	1	2	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0013	1374	3	3	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0014	1374	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0015	1374	2	2	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0016	1374	2	0	2	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0017	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0018	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0019	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0020	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0021	1374	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0022	1376	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0023	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0024	1374	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0025	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0026	1374	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0027	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0028	1374	1	0	1	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0029	1374	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0030	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0031	1374	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0032	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0033	1374	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0034	1374	1	0	0	1	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0035	1374	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0036	1376	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0037	1374	1	0	0	0	0	1	copy fasta	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	0/0	a0038	1376	1	1	0	0	0	0	copy fasta	AATK	chr17	81112295	81171221
ABAT_chr16_8669617_8789570	0/0	a0001	500	194	26	42	86	9	31	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	1/1	a0002	500	162	60	21	59	5	15	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	a0003	500	3	1	2	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	a0004	500	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	a0005	500	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570