JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL28A1_chr7_7352875_7540873	0/0	a0003	1125	17	3	7	6	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0004	1125	6	6	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0005	1125	5	4	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0006	1125	5	4	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0007	1125	5	5	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0008	1125	4	4	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0009	1125	3	2	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0010	1125	3	3	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	1/0	a0011	1125	3	1	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0012	1125	3	2	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0013	754	3	0	2	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0014	1125	2	2	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0015	1125	2	1	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0016	1125	2	0	2	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0017	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0018	1125	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0019	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0020	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0021	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0022	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0023	1125	1	0	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0024	1125	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0025	1125	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0026	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0027	1125	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0028	1125	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0029	1125	1	0	0	1	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0030	1125	1	0	1	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0031	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0032	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0033	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0034	1125	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	a0035	1125	1	0	0	0	0	1	copy fasta	COL28A1	chr7	7352875	7540873
COL2A1_chr12_47967967_48009476	0/0	a0001	1487	223	59	42	82	10	30	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/1	a0002	1487	74	0	13	54	2	4	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	1/0	a0003	1487	65	33	12	14	1	4	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0004	1487	30	0	1	24	0	5	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0005	1487	7	1	6	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0006	1487	2	0	0	0	1	1	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0007	1487	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0008	1487	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0009	1487	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0010	1487	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0011	1487	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0012	1487	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0013	1487	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0014	1487	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0015	1483	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	a0016	1487	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL3A1_chr2_188969373_189017746	0/1	a0001	1466	258	78	44	98	8	29	copy fasta	COL3A1	chr2	188969373	189017746