JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CT47A9_chrX_120938561_120951883	0/0	a0001	288	6	0	0	6	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47A9_chrX_120938561_120951883	0/0	a0002	288	1	0	0	1	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47A9_chrX_120938561_120951883	0/0	a0003	31	1	0	0	1	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47C1_chrX_119067993_119081765	1/1	a0001	324	281	63	43	133	11	29	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0002	308	5	5	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0003	324	5	5	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0004	308	4	0	0	4	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0005	324	3	1	2	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0006	308	2	2	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0007	324	2	2	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0008	324	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0009	330	1	0	1	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0010	324	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0011	175	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0012	301	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0013	324	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0014	185	1	0	0	0	0	1	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	a0015	59	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT55_chrX_135151540_135176398	1/1	a0001	264	268	70	52	110	9	25	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	a0002	264	1	0	0	1	0	0	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	a0003	264	1	0	0	0	0	1	copy fasta	CT55	chrX	135151540	135176398
CT83_chrX_116456686_116467976	1/1	a0001	113	338	79	49	163	11	34	copy fasta	CT83	chrX	116456686	116467976
CT83_chrX_116456686_116467976	0/0	a0002	113	1	1	0	0	0	0	copy fasta	CT83	chrX	116456686	116467976
CT83_chrX_116456686_116467976	0/0	a0003	113	1	0	1	0	0	0	copy fasta	CT83	chrX	116456686	116467976
CTAG1A_chrX_154580133_154591816	0/0	a0000	0	5	5	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0001	180	275	67	62	106	13	27	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0002	15	2	0	0	2	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0003	180	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0004	72	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0005	88	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0006	180	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0007	180	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0008	180	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0009	88	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0010	88	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0011	132	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0012	74	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	a0013	180	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1B_chrX_154612609_154624282	0/0	a0000	0	5	5	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0001	180	233	59	45	102	5	22	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0002	154	7	0	7	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0003	180	3	0	0	3	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0004	180	2	2	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0005	7	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0006	180	1	0	0	1	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0007	180	1	0	0	0	0	1	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	a0008	88	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG2_chrX_154646977_154658579	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0001	180	151	5	34	93	6	13	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	1/0	a0002	180	132	48	27	31	7	18	copy fasta	CTAG2	chrX	154646977	154658579