JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTSE_chr1_206004264_206028895	0/0	a0004	396	3	0	3	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0005	396	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0006	396	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0007	396	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0008	396	1	0	0	1	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	a0009	396	1	0	0	0	0	1	copy fasta	CTSE	chr1	206004264	206028895
CTSF_chr11_66558464_66573606	1/1	a0001	484	394	81	57	204	14	36	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0002	484	6	5	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0003	484	4	3	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0004	484	2	2	0	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0005	484	2	0	2	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0006	484	1	0	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0007	484	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0008	484	1	1	0	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	a0009	484	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSG_chr14_24568518_24581250	1/1	a0001	255	376	86	65	166	17	40	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	a0002	255	57	2	3	47	1	4	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	a0003	255	4	3	1	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	a0004	255	1	1	0	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	a0005	255	1	0	0	1	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	a0006	255	1	0	1	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSH_chr15_78916058_78950046	1/1	a0001	335	277	71	35	153	2	14	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0002	335	90	20	23	16	7	24	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0003	335	23	0	5	9	5	4	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0004	335	11	0	6	5	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0005	335	5	5	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0006	335	3	1	2	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0007	1	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0008	335	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0009	335	1	1	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0010	335	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	a0011	335	1	0	1	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSK_chr1_150791208_150813260	1/1	a0001	329	389	89	54	182	16	46	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	a0002	329	2	2	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	a0003	329	1	1	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSL_chr9_87721119_87736469	1/1	a0001	333	384	83	72	168	18	41	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	a0002	333	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	a0003	333	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	a0004	333	1	0	0	0	0	1	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	a0005	333	1	1	0	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSO_chr4_155919118_155958866	0/0	a0001	321	347	79	68	144	10	46	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	a0002	321	1	1	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSS_chr1_150725188_150770778	1/0	a0001	331	228	61	29	105	10	22	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/1	a0002	331	110	21	18	51	5	14	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	a0003	331	6	0	3	0	1	2	copy fasta	CTSS	chr1	150725188	150770778
CTSV_chr9_97024677_97044142	1/1	a0001	334	403	90	62	199	10	40	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	a0002	334	5	5	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	a0003	334	1	1	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	a0004	334	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSW_chr11_65874837_65888741	0/1	a0001	376	341	71	65	157	14	33	copy fasta	CTSW	chr11	65874837	65888741