JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CXorf49B_chrX_71758349_71772204	0/0	a0003	514	10	4	1	3	0	2	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0004	514	2	0	0	2	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0005	500	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0006	514	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0007	514	1	1	0	0	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0008	514	1	1	0	0	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	a0009	65	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49_chrX_71709371_71723285	0/0	a0001	514	40	5	15	12	3	5	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0002	514	13	4	1	5	0	3	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0003	514	8	4	2	1	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0004	514	2	2	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0005	514	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0006	65	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0007	68	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0008	514	1	0	0	0	1	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0009	500	1	0	1	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0010	372	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0011	209	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0012	213	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0013	515	1	0	1	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	a0014	514	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf51A_chrX_146809106_146819744	0/0	a0000	0	13	0	1	4	0	8	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0001	108	243	56	50	102	13	22	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0002	108	2	0	0	2	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0003	108	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0004	108	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0005	36	1	1	0	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0006	67	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0007	108	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	a0008	105	1	0	0	1	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51B_chrX_146804771_146815411	0/0	a0000	0	9	1	1	4	2	1	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0001	108	200	61	29	72	9	29	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0002	108	55	5	18	28	2	2	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0003	108	5	0	2	3	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0004	108	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0005	43	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	a0006	45	1	0	0	1	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf58_chrX_23903006_23944509	1/0	a0001	332	179	53	23	77	6	19	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/1	a0002	332	102	16	28	45	3	9	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	a0003	332	8	7	1	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	a0004	332	4	0	0	4	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	a0005	332	1	0	1	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	a0006	332	1	0	0	1	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf65_chrX_71098889_71111740	1/1	a0001	183	275	68	52	117	7	29	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	a0002	183	8	8	0	0	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	a0003	30	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	a0004	183	1	0	0	0	0	1	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	a0005	183	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	a0006	123	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf66_chrX_139950728_139970521	1/1	a0001	361	162	20	41	65	11	23	copy fasta	CXorf66	chrX	139950728	139970521