JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DPYD_chr1_97072743_97926034	0/0	a0005	1025	3	3	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0006	1025	3	3	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0007	1025	2	1	0	0	0	1	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0008	1025	2	2	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0009	1025	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0010	1025	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0011	1025	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYSL2_chr8_26509031_26663175	1/1	a0001	677	303	84	63	98	14	42	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	a0002	677	6	0	0	6	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	a0003	677	4	3	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	a0004	677	2	0	0	2	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	a0005	677	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL3_chr5_147385808_147515068	1/1	a0001	684	294	89	62	99	8	34	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	a0002	684	2	2	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	a0003	684	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	a0004	684	1	0	0	1	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL4_chr10_132181948_132210759	1/1	a0001	572	390	85	66	186	12	39	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	a0002	572	15	6	5	1	0	3	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	a0003	572	10	7	3	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	a0004	572	2	0	0	0	2	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	a0005	572	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL5_chr2_26843132_26955351	1/1	a0001	564	229	88	57	56	12	14	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	a0002	564	3	0	1	0	2	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYS_chr8_104374431_104472055	1/1	a0001	519	360	74	71	157	16	40	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	a0002	519	12	5	0	7	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	a0003	519	5	4	1	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	a0004	519	2	0	0	2	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	a0005	519	1	1	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DQX1_chr2_74513131_74531231	1/1	a0001	717	337	86	66	143	10	30	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0002	717	7	7	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0003	717	4	4	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0004	717	2	0	0	2	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0005	717	1	1	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0006	717	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0007	305	1	0	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0008	717	1	0	1	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0009	717	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	a0010	717	1	0	0	1	0	0	copy fasta	DQX1	chr2	74513131	74531231
DR1_chr1_93340907_93374493	1/1	a0001	176	333	89	65	137	16	24	copy fasta	DR1	chr1	93340907	93374493
DR1_chr1_93340907_93374493	0/0	a0002	176	27	3	7	11	0	6	copy fasta	DR1	chr1	93340907	93374493
DRAM1_chr12_101872580_101928612	1/1	a0001	238	395	98	65	188	10	32	copy fasta	DRAM1	chr12	101872580	101928612
DRAM1_chr12_101872580_101928612	0/0	a0002	238	1	0	1	0	0	0	copy fasta	DRAM1	chr12	101872580	101928612
DRAM2_chr1_111112163_111145093	1/1	a0001	266	437	94	82	204	10	45	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	a0002	266	2	2	0	0	0	0	copy fasta	DRAM2	chr1	111112163	111145093
DRAM2_chr1_111112163_111145093	0/0	a0003	266	1	0	0	0	0	1	copy fasta	DRAM2	chr1	111112163	111145093
DRAP1_chr11_65914426_65926563	1/1	a0001	205	399	96	72	179	12	38	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	a0002	205	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	a0003	205	1	1	0	0	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAP1_chr11_65914426_65926563	0/0	a0004	205	1	0	0	1	0	0	copy fasta	DRAP1	chr11	65914426	65926563
DRAXIN_chr1_11686710_11730857	1/1	a0001	349	281	70	51	107	14	37	copy fasta	DRAXIN	chr1	11686710	11730857