JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ELP1_chr9_108862517_108939124	1/0	a0001	1332	217	27	46	99	12	32	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0002	1332	43	7	0	30	2	4	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0003	1332	43	11	7	23	0	2	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/1	a0004	1332	27	2	8	14	0	2	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0005	1332	16	12	3	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0006	1332	14	14	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0007	1332	10	8	2	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0008	1332	10	0	0	10	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0009	1332	6	0	0	6	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0010	1332	4	0	2	0	2	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0011	1332	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0012	1332	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0013	1332	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0014	1332	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0015	1332	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0016	1332	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0017	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0018	1332	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0019	1332	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0020	1332	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0021	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0022	1332	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0023	934	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0024	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0025	1273	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0026	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0027	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0028	1332	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0029	1332	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0030	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0031	1332	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0032	1332	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	a0033	1332	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP2_chr18_36124899_36185557	1/1	a0001	826	224	46	40	100	9	27	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0002	826	84	14	23	38	3	6	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0003	826	36	0	0	35	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0004	826	13	11	0	1	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0005	826	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0006	826	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0007	826	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0008	826	2	2	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0009	826	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0010	442	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0011	826	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0012	826	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0013	826	1	0	0	0	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0014	826	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	a0015	826	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP3_chr8_28088139_28196153	1/1	a0001	547	397	94	76	172	17	36	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	a0002	547	1	0	0	0	1	0	copy fasta	ELP3	chr8	28088139	28196153