JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EMSY_chr11_76440018_76558031	1/1	a0001	1337	354	78	64	156	16	38	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	a0002	1337	3	0	0	3	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	a0003	1337	2	2	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	a0004	1337	1	0	0	1	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMX1_chr2_72912519_72939891	1/1	a0001	290	306	98	60	96	14	36	copy fasta	EMX1	chr2	72912519	72939891
EMX2_chr10_117537746_117554546	1/1	a0001	252	402	94	60	186	16	44	copy fasta	EMX2	chr10	117537746	117554546
EN1_chr2_118837171_118852648	1/1	a0001	392	437	89	80	204	18	44	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	a0002	384	3	3	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	a0003	392	2	0	0	2	0	0	copy fasta	EN1	chr2	118837171	118852648
EN2_chr7_155453129_155469831	0/0	a0001	333	248	81	58	78	6	25	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	a0002	333	180	14	28	110	6	22	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	a0003	333	2	0	2	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	a0004	333	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	a0005	333	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
ENAH_chr1_225481829_225658123	1/1	a0001	570	274	56	50	119	13	34	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0002	564	19	6	4	5	1	3	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0003	576	8	1	2	4	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0004	570	3	0	0	3	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0005	558	1	0	0	1	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0006	412	1	0	1	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0007	570	1	1	0	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	a0008	564	1	0	1	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAM_chr4_70623744_70651824	1/1	a0001	1142	317	30	61	183	6	35	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0002	1142	36	25	5	3	0	3	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0003	1142	15	14	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0004	1142	12	12	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0005	1142	11	0	0	11	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0006	1142	5	0	0	5	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0007	1142	4	3	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0008	1142	3	0	0	3	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0009	1142	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0010	1142	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0011	1142	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0012	1142	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0013	1142	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0014	1142	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	a0015	1142	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENC1_chr5_74622409_74645728	1/1	a0001	589	428	94	84	184	16	48	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	a0002	589	2	0	0	2	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENDOD1_chr11_95084846_95137645	1/1	a0001	500	251	77	53	90	11	18	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0002	500	70	5	10	35	4	16	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0003	500	25	0	5	12	1	7	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0004	500	14	7	0	6	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0005	500	4	2	2	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0006	500	2	2	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0007	500	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	a0008	500	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOG_chr9_128813500_128827676	0/1	a0001	297	267	26	53	149	12	26	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	1/0	a0002	297	140	61	20	39	1	18	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	a0003	297	9	0	0	9	0	0	copy fasta	ENDOG	chr9	128813500	128827676