JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPHX2_chr8_27486143_27550564	0/0	a0006	555	5	1	3	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0007	556	4	0	2	2	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0008	555	3	3	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0009	556	2	0	2	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0010	555	1	0	0	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0011	555	1	0	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0012	555	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0013	555	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0014	555	1	0	0	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0015	555	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0016	555	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0017	555	1	0	0	0	0	1	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0018	555	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0019	555	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	a0020	555	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX3_chr19_15221919_15237448	1/1	a0001	360	369	80	70	158	16	43	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	a0002	360	2	0	0	1	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	a0003	360	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	a0004	360	1	0	0	1	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	a0005	360	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX4_chr1_92024985_92068538	1/1	a0001	362	235	86	52	55	12	28	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	a0002	362	1	0	0	1	0	0	copy fasta	EPHX4	chr1	92024985	92068538
EPM2AIP1_chr3_36980043_36998131	1/1	a0001	607	401	93	71	180	14	41	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	a0002	607	3	3	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	a0003	607	1	0	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	a0004	607	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2A_chr6_145620305_145740520	1/1	a0001	331	305	86	43	132	10	32	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0002	331	6	0	0	6	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0003	331	3	1	0	0	1	1	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0004	331	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0005	331	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0006	331	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0007	331	1	1	0	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0008	331	1	0	0	0	0	1	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	a0009	95	1	0	0	0	1	0	copy fasta	EPM2A	chr6	145620305	145740520
EPN2_chr17_19232366_19341715	0/1	a0001	641	249	83	41	88	8	28	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	1/0	a0002	641	31	1	5	16	0	8	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	a0003	641	1	0	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN2_chr17_19232366_19341715	0/0	a0004	641	1	0	1	0	0	0	copy fasta	EPN2	chr17	19232366	19341715
EPN3_chr17_50527735_50548750	1/1	a0001	632	209	33	38	91	10	35	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0002	632	99	49	21	16	7	6	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0003	632	19	3	7	7	1	1	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0004	632	5	0	3	0	0	2	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0005	632	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0006	632	3	3	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0007	632	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0008	632	2	2	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0009	632	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0010	638	1	1	0	0	0	0	copy fasta	EPN3	chr17	50527735	50548750
EPN3_chr17_50527735_50548750	0/0	a0011	632	1	0	0	0	0	1	copy fasta	EPN3	chr17	50527735	50548750