JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EPS8L3_chr1_109745080_109768923	0/0	a0010	593	2	2	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0011	593	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0012	593	1	0	1	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0013	593	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0014	593	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0015	593	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0016	593	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0017	286	1	0	0	0	0	1	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0018	593	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0019	593	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	a0020	593	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8_chr12_15615134_15794388	1/1	a0001	822	95	58	15	16	0	4	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	a0002	822	4	2	0	2	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	a0003	822	2	0	0	2	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	a0004	822	1	0	1	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPSTI1_chr13_42881388_42997241	1/1	a0001	307	337	68	69	150	8	40	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0002	307	5	5	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0003	187	4	3	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0004	307	2	2	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0005	223	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0006	307	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0007	307	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	a0008	307	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPX_chr17_58187726_58210174	1/1	a0001	715	266	50	43	131	11	29	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0002	715	26	6	3	14	2	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0003	715	24	9	7	0	1	7	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0004	715	24	15	3	5	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0005	715	11	0	1	8	1	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0006	715	9	8	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0007	715	7	0	0	7	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0008	715	4	0	0	4	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0009	715	3	3	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0010	715	3	1	2	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0011	715	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0012	715	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0013	715	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0014	715	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0015	715	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0016	715	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0017	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0018	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0019	256	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0020	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0021	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0022	715	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0023	715	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0024	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0025	715	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0026	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	a0027	715	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174