JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERAP2_chr5_96871500_96924703	0/0	a0005	960	13	0	6	0	3	4	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0006	960	4	0	0	1	0	3	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0007	960	2	1	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0008	960	2	2	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0009	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0010	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0011	960	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0012	960	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0013	960	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0014	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0015	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0016	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0017	960	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	a0018	960	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAS_chrX_48821513_48834869	1/1	a0001	233	302	71	61	125	13	30	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	a0002	233	4	0	0	4	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	a0003	233	1	1	0	0	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	a0004	233	1	0	1	0	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERBB2_chr17_39695064_39733658	0/0	a0001	1255	165	59	27	58	6	15	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0002	1255	102	15	24	45	6	12	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0003	1255	33	2	6	20	4	1	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0004	1255	6	6	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0005	1255	2	2	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0006	1255	2	0	0	2	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0007	1255	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0008	1255	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0009	1255	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0010	1255	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0011	1266	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0012	1255	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0013	1255	1	0	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	a0014	1255	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB3_chr12_56075165_56108505	1/1	a0001	1342	358	79	79	148	16	34	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0002	1342	16	9	4	0	2	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0003	1342	8	0	0	8	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0004	1342	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0005	1342	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0006	1342	1	0	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0007	1342	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0008	1342	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0009	1342	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0010	1342	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0011	964	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0012	1342	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	a0013	1342	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB4_chr2_211370717_212543802	0/0	a0001	1308	55	42	10	0	0	3	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	a0002	1308	1	0	0	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBIN_chr5_65921575_66087546	1/1	a0001	1412	182	53	26	86	3	12	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0002	1412	46	1	9	32	1	3	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0003	1412	31	0	6	18	2	5	copy fasta	ERBIN	chr5	65921575	66087546