JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ERBIN_chr5_65921575_66087546	0/0	a0004	1412	16	15	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0005	1412	12	10	2	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0006	1412	5	0	0	5	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0007	1412	2	2	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0008	1412	2	2	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0009	1412	2	0	0	2	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0010	1412	2	0	0	2	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0011	1412	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0012	1412	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0013	1412	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0014	1412	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0015	1412	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	a0016	1412	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERC1_chr12_986223_1500931	1/1	a0001	1116	91	22	26	17	11	13	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0002	1116	61	51	9	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0003	1116	4	0	4	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0004	1116	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0005	1116	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0006	1116	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0007	1116	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0008	1116	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	a0009	1116	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC2_chr3_55503311_56473467	1/1	a0001	957	69	39	15	3	2	8	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	a0002	957	3	0	3	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	a0003	957	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	a0004	957	1	0	0	1	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERCC1_chr19_45402334_45428917	1/1	a0001	297	416	91	72	185	16	50	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	a0002	297	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	a0003	297	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	a0004	297	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	a0005	297	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC2_chr19_45344837_45375573	1/1	a0001	760	318	76	60	149	6	25	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0002	760	54	12	11	12	8	11	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0003	760	16	8	1	5	1	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0004	760	13	0	3	7	1	2	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0005	760	2	0	0	0	0	2	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0006	760	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0007	760	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0008	760	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0009	760	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0010	760	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0011	760	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0012	760	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0013	760	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	a0014	760	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC3_chr2_127252290_127299144	1/1	a0001	782	346	91	69	131	8	45	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	a0002	782	1	0	0	1	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	a0003	782	1	0	0	0	0	1	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	a0004	782	1	1	0	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	a0005	782	1	0	1	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144