JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLN5_chr13_76987081_77010117	0/0	c0005	1077	3	0	2	0	1	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0006	1077	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0009	1077	1	0	1	0	0	0	copy fasta	CLN5	chr13	76987081	77010117
CLN6_chr15_68201992_68234728	1/1	c0001	936	307	93	59	108	11	34	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0002	936	5	0	0	5	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0003	936	3	0	0	0	0	3	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0004	936	2	0	1	0	1	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0005	936	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0006	936	1	0	0	0	0	1	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0007	936	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0008	936	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0009	936	1	0	0	1	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0010	936	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN6_chr15_68201992_68234728	0/0	c0011	936	1	1	0	0	0	0	copy fasta	CLN6	chr15	68201992	68234728
CLN8_chr8_1758789_1791570	0/1	c0001	861	397	84	65	183	18	46	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0002	861	5	0	5	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0003	861	3	3	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0004	861	2	2	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0005	861	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0006	861	1	0	0	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0007	861	1	1	0	0	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0008	861	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0009	861	1	0	0	1	0	0	copy fasta	CLN8	chr8	1758789	1791570
CLN8_chr8_1758789_1791570	0/0	c0010	861	1	0	0	0	0	1	copy fasta	CLN8	chr8	1758789	1791570
CLNK_chr4_10481395_10689768	0/1	c0001	1287	278	74	47	118	12	26	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0002	1287	12	2	0	10	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0003	1287	9	2	3	0	2	2	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	1/0	c0004	1287	5	4	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0005	1287	4	0	0	4	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0006	1287	4	0	4	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0007	1287	2	2	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0008	1287	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0009	1287	1	0	0	0	0	1	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0010	1287	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0011	1287	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0012	1287	1	0	0	1	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNK_chr4_10481395_10689768	0/0	c0013	1287	1	1	0	0	0	0	copy fasta	CLNK	chr4	10481395	10689768
CLNS1A_chr11_77609530_77642794	1/1	c0001	714	405	90	73	184	16	40	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	c0002	714	2	0	0	2	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLNS1A_chr11_77609530_77642794	0/0	c0003	714	1	0	1	0	0	0	copy fasta	CLNS1A	chr11	77609530	77642794
CLOCK_chr4_55422903_55551909	0/0	c0001	2541	190	36	35	88	7	24	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	1/1	c0002	2541	97	21	19	41	3	11	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0003	2541	31	30	1	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0004	2541	7	7	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0005	2541	2	0	0	2	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0006	2541	2	0	2	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0007	2541	2	0	1	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0008	2541	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909