JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL28A1_chr7_7352875_7540873	0/0	c0051	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL28A1_chr7_7352875_7540873	0/0	c0052	3378	1	1	0	0	0	0	copy fasta	COL28A1	chr7	7352875	7540873
COL2A1_chr12_47967967_48009476	0/1	c0001	4464	72	0	13	52	2	4	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0002	4464	70	4	16	34	4	12	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0003	4464	50	22	12	6	2	8	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0004	4464	47	6	9	19	3	10	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	1/0	c0005	4464	26	12	10	1	0	2	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0006	4464	21	0	0	21	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0007	4464	13	0	1	8	0	4	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0008	4464	11	10	1	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0009	4464	10	6	1	3	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0010	4464	7	0	0	7	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0011	4464	7	1	6	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0012	4464	6	3	1	0	0	2	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0013	4464	6	0	0	6	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0014	4464	5	4	1	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0015	4464	5	0	0	4	0	1	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0016	4464	4	2	0	1	1	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0017	4464	4	0	0	4	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0018	4464	4	4	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0019	4464	3	3	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0020	4464	3	0	0	3	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0021	4464	2	2	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0022	4464	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0023	4464	2	2	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0024	4464	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0025	4464	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0026	4464	2	2	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0027	4464	2	2	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0028	4464	2	0	0	2	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0029	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0030	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0031	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0032	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0033	4452	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0034	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0035	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0036	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0037	4464	1	0	0	0	0	1	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0038	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0039	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0040	4464	1	0	1	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0041	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0042	4464	1	0	1	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0043	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0044	4464	1	0	0	0	1	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0045	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0046	4464	1	0	1	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0047	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0048	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476