JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COL2A1_chr12_47967967_48009476	0/0	c0049	4464	1	0	0	1	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0050	4464	1	0	0	0	1	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0051	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL2A1_chr12_47967967_48009476	0/0	c0052	4464	1	1	0	0	0	0	copy fasta	COL2A1	chr12	47967967	48009476
COL3A1_chr2_188969373_189017746	0/1	c0001	4401	190	45	28	93	3	20	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0002	4401	88	9	17	45	6	11	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0003	4401	31	16	7	0	1	7	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0004	4401	22	2	9	5	4	2	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0005	4401	16	0	0	16	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0006	4401	9	9	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0007	4401	6	6	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0008	4401	2	0	2	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0009	4401	2	0	0	0	0	2	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0010	4401	2	0	0	2	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0011	4401	2	0	0	2	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0012	4401	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0013	4401	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	1/0	c0014	4401	1	0	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0015	4401	1	0	0	1	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0016	4401	1	0	1	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL3A1_chr2_188969373_189017746	0/0	c0017	4401	1	1	0	0	0	0	copy fasta	COL3A1	chr2	188969373	189017746
COL4A1_chr13_110143963_110312157	0/0	c0001	5010	33	3	6	18	0	6	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/1	c0002	5010	25	4	2	15	1	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0003	5010	18	2	1	13	1	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	1/0	c0004	5010	17	7	3	6	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0005	5010	15	4	3	6	0	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0006	5010	10	2	3	2	2	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0007	5010	10	0	0	9	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0008	5010	9	1	2	2	2	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0009	5010	8	5	2	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0010	5010	7	1	3	0	0	3	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0011	5010	7	2	3	2	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0012	5010	7	3	3	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0013	5010	6	0	4	0	0	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0014	5010	6	0	0	6	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0015	5010	6	5	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0016	5010	5	4	1	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0017	5010	5	0	0	4	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0018	5010	5	4	0	1	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0019	5010	4	1	0	2	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0020	5010	4	2	0	2	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0021	5010	4	1	0	3	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0022	5010	4	0	0	3	0	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0023	5010	4	1	1	0	0	2	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0024	5010	4	0	0	4	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0025	5010	3	0	3	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0026	5010	3	0	1	0	1	1	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0027	5010	3	0	3	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0028	5010	3	0	3	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157
COL4A1_chr13_110143963_110312157	0/0	c0029	5010	3	3	0	0	0	0	copy fasta	COL4A1	chr13	110143963	110312157