JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYM_chr16_21253521_21283290	0/0	c0006	945	1	0	1	0	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYZL1_chr21_33584341_33646741	1/1	c0001	1050	357	84	72	146	15	38	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	c0002	1050	1	0	0	1	0	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	c0003	1050	1	0	0	0	1	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	c0004	1050	1	0	0	1	0	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZ_chr1_74700486_74738050	0/0	c0001	990	165	32	20	93	2	18	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	1/0	c0002	990	79	16	14	34	4	10	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0003	990	48	24	16	0	4	4	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0004	990	31	3	17	0	4	7	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/1	c0005	990	18	0	0	16	0	1	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0006	990	15	14	1	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0007	990	10	0	1	9	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0008	990	3	2	1	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0009	990	2	1	0	0	0	1	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	c0010	990	1	0	0	0	0	1	copy fasta	CRYZ	chr1	74700486	74738050
CSAD_chr12_53152663_53185925	1/1	c0001	1482	278	82	39	109	5	41	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0002	1482	41	1	1	38	1	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0003	1482	6	5	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0004	1482	2	1	0	0	0	1	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0005	1482	1	1	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0006	1482	1	0	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0007	1482	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0009	1482	1	0	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0010	1482	1	0	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	c0011	1482	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAG1_chrX_152722484_152738721	1/1	c0001	237	147	52	39	41	6	7	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	c0002	237	146	20	14	88	2	22	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	c0003	237	22	5	7	9	1	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	c0004	237	2	2	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	c0005	237	1	1	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG2_chrX_152703261_152714273	0/0	c0000	0	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0001	384	133	45	15	58	5	10	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0002	384	56	8	23	14	6	5	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0003	384	15	0	2	13	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0004	384	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0005	384	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0006	384	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0007	384	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0008	383	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	c0009	384	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSDC2_chr22_41556010_41581666	1/1	c0001	462	285	90	64	79	12	38	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	c0002	462	2	2	0	0	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDC2_chr22_41556010_41581666	0/0	c0003	462	1	0	0	1	0	0	copy fasta	CSDC2	chr22	41556010	41581666
CSDE1_chr1_114711916_114762984	1/1	c0001	2397	307	80	63	111	12	39	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	c0002	2397	9	4	1	3	0	1	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	c0003	2397	6	0	0	6	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	c0004	2397	2	2	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	c0005	2397	2	2	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984
CSDE1_chr1_114711916_114762984	0/0	c0006	2397	1	1	0	0	0	0	copy fasta	CSDE1	chr1	114711916	114762984