JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CT47A9_chrX_120938561_120951883	0/0	c0001	867	6	0	0	6	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47A9_chrX_120938561_120951883	0/0	c0002	867	1	0	0	1	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47A9_chrX_120938561_120951883	0/0	c0003	868	1	0	0	1	0	0	copy fasta	CT47A9	chrX	120938561	120951883
CT47C1_chrX_119067993_119081765	1/1	c0001	975	257	43	41	133	11	27	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0002	975	12	12	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0003	975	9	7	2	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0004	975	5	5	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0005	927	4	0	0	4	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0006	975	3	1	2	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0007	927	3	3	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0008	927	2	2	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0009	975	2	0	0	0	0	2	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0010	975	2	2	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0011	975	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0012	927	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0013	927	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0014	975	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0015	975	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0016	937	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0017	976	1	0	0	0	0	1	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0018	976	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0019	993	1	0	1	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0020	981	1	0	0	1	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT47C1_chrX_119067993_119081765	0/0	c0021	975	1	1	0	0	0	0	copy fasta	CT47C1	chrX	119067993	119081765
CT55_chrX_135151540_135176398	1/1	c0001	795	268	70	52	110	9	25	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	c0002	795	1	0	0	0	0	1	copy fasta	CT55	chrX	135151540	135176398
CT55_chrX_135151540_135176398	0/0	c0003	795	1	0	0	1	0	0	copy fasta	CT55	chrX	135151540	135176398
CT83_chrX_116456686_116467976	1/1	c0001	342	338	79	49	163	11	34	copy fasta	CT83	chrX	116456686	116467976
CT83_chrX_116456686_116467976	0/0	c0002	342	1	1	0	0	0	0	copy fasta	CT83	chrX	116456686	116467976
CT83_chrX_116456686_116467976	0/0	c0003	342	1	0	1	0	0	0	copy fasta	CT83	chrX	116456686	116467976
CTAG1A_chrX_154580133_154591816	0/0	c0001	543	275	67	62	106	13	27	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0002	544	5	5	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0003	543	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0004	544	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0005	548	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0006	543	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0007	552	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0008	542	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0009	544	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0010	545	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0011	543	1	1	0	0	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0012	543	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0013	543	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0014	544	1	0	0	0	0	1	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1A_chrX_154580133_154591816	0/0	c0015	545	1	0	0	1	0	0	copy fasta	CTAG1A	chrX	154580133	154591816
CTAG1B_chrX_154612609_154624282	0/0	c0000	0	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0001	543	233	59	45	102	5	22	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0002	543	7	0	7	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0003	544	4	4	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0004	543	3	0	0	3	0	0	copy fasta	CTAG1B	chrX	154612609	154624282