JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTNS_chr17_3631760_3668103	0/0	c0006	1104	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0007	1104	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0008	1104	1	1	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0009	1104	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0010	1104	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0011	1104	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0012	1104	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTPS1_chr1_40974696_41017565	1/1	c0001	1776	356	82	69	157	14	32	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0002	1776	22	3	0	16	0	3	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0003	1776	2	0	0	0	2	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0004	1776	2	0	0	2	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0005	1776	2	1	1	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0006	1776	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0007	1776	1	0	0	1	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0008	1776	1	0	0	0	0	1	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	c0009	1776	1	1	0	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS2_chrX_16582999_16717669	1/1	c0001	1761	197	52	41	78	7	17	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	c0002	1761	27	8	4	12	0	3	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	c0003	1761	1	0	1	0	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	c0004	1760	1	0	0	1	0	0	copy fasta	CTPS2	chrX	16582999	16717669
CTR9_chr11_10746246_10784746	0/0	c0001	3522	252	28	51	129	15	29	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0002	3522	72	8	10	41	3	10	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	1/1	c0003	3522	57	48	6	0	0	1	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0004	3522	7	7	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0005	3522	6	0	0	6	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0006	3522	2	2	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0007	3522	2	2	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0008	3522	1	1	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0009	3522	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0010	3522	1	0	1	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0011	3522	1	1	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0012	3522	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0013	3522	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0014	3522	1	0	0	1	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTR9_chr11_10746246_10784746	0/0	c0015	3522	1	1	0	0	0	0	copy fasta	CTR9	chr11	10746246	10784746
CTRB1_chr16_75213988_75229924	1/1	c0001	792	2	0	0	0	0	0	copy fasta	CTRB1	chr16	75213988	75229924
CTRB2_chr16_75199103_75212161	1/1	c0001	792	6	0	4	0	0	0	copy fasta	CTRB2	chr16	75199103	75212161
CTRC_chr1_15433443_15454242	1/1	c0001	807	339	57	62	164	14	40	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0002	807	37	0	7	28	1	1	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0003	807	29	17	7	1	1	3	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0004	807	11	10	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0005	807	5	5	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0006	807	3	3	0	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0007	807	2	0	0	0	0	2	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0008	807	1	0	0	1	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRC_chr1_15433443_15454242	0/0	c0009	807	1	0	1	0	0	0	copy fasta	CTRC	chr1	15433443	15454242
CTRL_chr16_67924574_67936862	1/1	c0001	795	187	34	43	85	2	21	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0002	795	96	41	21	23	2	9	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0003	795	13	13	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0004	795	3	3	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862