JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTRL_chr16_67924574_67936862	0/0	c0005	795	3	3	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0006	795	3	0	0	3	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0007	795	2	2	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0008	795	1	0	1	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0009	795	1	1	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0010	795	1	0	0	1	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0011	795	1	1	0	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTRL_chr16_67924574_67936862	0/0	c0012	795	1	0	1	0	0	0	copy fasta	CTRL	chr16	67924574	67936862
CTSA_chr20_45886335_45903820	0/1	c0001	1440	221	51	51	88	8	22	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	1/0	c0002	1443	117	23	15	56	7	15	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0003	1440	48	11	4	26	0	7	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0004	1440	35	0	1	32	0	2	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0005	1440	4	3	0	0	1	0	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0006	1440	3	3	0	0	0	0	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0007	1440	1	0	1	0	0	0	copy fasta	CTSA	chr20	45886335	45903820
CTSA_chr20_45886335_45903820	0/0	c0008	1443	1	1	0	0	0	0	copy fasta	CTSA	chr20	45886335	45903820
CTSB_chr8_11837524_11873087	1/0	c0001	1020	160	15	30	90	6	18	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0002	1020	153	25	19	89	2	18	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0003	1020	40	19	8	1	4	8	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0004	1020	21	12	6	0	1	2	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/1	c0005	1020	16	2	10	0	3	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0006	1020	7	1	4	1	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0007	1020	7	0	0	7	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0008	1020	6	6	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0009	1020	5	5	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0010	1020	4	4	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0011	1020	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0012	1020	3	3	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0013	1020	3	0	0	3	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0014	1020	2	0	0	2	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0015	1020	1	0	0	0	0	1	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0016	1020	1	0	1	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0017	1020	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0018	1020	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0019	1020	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0020	1020	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0021	1020	1	1	0	0	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSB_chr8_11837524_11873087	0/0	c0022	1020	1	0	0	1	0	0	copy fasta	CTSB	chr8	11837524	11873087
CTSC_chr11_88288592_88342736	0/1	c0001	1392	365	79	60	176	11	38	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	c0002	1392	47	11	8	25	1	2	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	1/0	c0003	1392	18	4	8	0	4	1	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	c0004	1392	1	0	0	1	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	c0005	1392	1	0	0	0	0	1	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	c0006	1392	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSC_chr11_88288592_88342736	0/0	c0007	1392	1	1	0	0	0	0	copy fasta	CTSC	chr11	88288592	88342736
CTSD_chr11_1747755_1768927	1/1	c0001	1239	338	82	61	139	14	40	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0002	1239	18	0	0	18	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0003	1239	17	3	8	1	0	5	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0004	1239	7	6	1	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0005	1239	2	1	0	0	0	1	copy fasta	CTSD	chr11	1747755	1768927