JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CXXC1_chr18_50277347_50292692	0/0	c0015	1971	1	0	1	0	0	0	copy fasta	CXXC1	chr18	50277347	50292692
CXXC4_chr4_104463308_104499894	1/1	c0001	1104	300	81	57	119	8	33	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0002	1105	20	4	7	6	0	3	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0003	1104	5	0	0	5	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0004	1104	2	2	0	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0005	1104	2	1	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0007	1104	1	0	1	0	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC4_chr4_104463308_104499894	0/0	c0008	1086	1	0	0	1	0	0	copy fasta	CXXC4	chr4	104463308	104499894
CXXC5_chr5_139643349_139688882	1/1	c0001	969	199	46	57	57	12	25	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	c0002	969	65	43	3	6	4	9	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	c0003	969	1	0	0	1	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXXC5_chr5_139643349_139688882	0/0	c0004	969	1	1	0	0	0	0	copy fasta	CXXC5	chr5	139643349	139688882
CXorf38_chrX_40621921_40652561	0/1	c0001	960	290	75	51	127	13	23	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	1/0	c0002	960	7	1	1	0	0	4	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	c0003	960	3	3	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	c0004	960	2	0	2	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	c0005	960	1	0	0	0	0	1	copy fasta	CXorf38	chrX	40621921	40652561
CXorf38_chrX_40621921_40652561	0/0	c0006	960	1	1	0	0	0	0	copy fasta	CXorf38	chrX	40621921	40652561
CXorf49B_chrX_71758349_71772204	0/0	c0001	1545	56	9	18	14	7	8	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0002	1545	19	8	2	7	0	2	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0003	1545	10	4	1	3	0	2	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0004	1545	3	3	0	0	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0005	1545	2	0	0	2	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0006	1545	1	1	0	0	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0007	1546	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0008	1545	1	1	0	0	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0009	1544	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49B_chrX_71758349_71772204	0/0	c0010	1545	1	0	0	1	0	0	copy fasta	CXorf49B	chrX	71758349	71772204
CXorf49_chrX_71709371_71723285	0/0	c0001	1545	38	4	14	12	3	5	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0002	1545	13	4	1	5	0	3	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0003	1545	8	4	2	1	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0004	1545	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0005	1541	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0006	1544	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0007	1545	1	1	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0008	1561	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0009	1546	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0010	1545	1	1	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0011	1544	1	0	1	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0012	1545	1	1	0	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0013	1545	1	0	0	0	1	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0014	1549	1	0	0	1	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0015	1548	1	0	1	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0016	1545	1	0	1	0	0	0	copy fasta	CXorf49	chrX	71709371	71723285
CXorf49_chrX_71709371_71723285	0/0	c0017	1545	1	0	0	0	0	1	copy fasta	CXorf49	chrX	71709371	71723285
CXorf51A_chrX_146809106_146819744	0/0	c0001	327	242	56	50	102	12	22	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0002	23	13	0	1	4	0	8	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0003	327	2	0	0	2	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0004	327	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744