JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPYD_chr1_97072743_97926034	0/0	c0006	3078	3	3	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0007	3078	2	2	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0008	3078	2	1	0	0	0	1	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0009	3078	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0010	3078	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0011	3078	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0012	3078	1	0	0	0	1	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0013	3078	1	1	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	c0014	3078	1	0	0	0	0	1	copy fasta	DPYD	chr1	97072743	97926034
DPYSL2_chr8_26509031_26663175	0/0	c0001	2034	149	56	28	34	8	23	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/1	c0002	2034	103	7	21	56	2	16	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	1/0	c0003	2034	16	3	3	7	1	1	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0004	2034	7	3	3	0	1	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0005	2034	6	0	0	6	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0006	2034	5	5	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0007	2034	5	0	3	0	1	1	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0008	2034	5	4	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0009	2034	3	2	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0010	2034	3	0	3	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0011	2034	2	0	0	0	1	1	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0012	2034	2	0	0	2	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0013	2034	1	0	0	1	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0014	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0015	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0016	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0017	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0018	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0019	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0020	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0021	2034	1	1	0	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL2_chr8_26509031_26663175	0/0	c0022	2034	1	0	1	0	0	0	copy fasta	DPYSL2	chr8	26509031	26663175
DPYSL3_chr5_147385808_147515068	1/1	c0001	2055	210	50	49	69	7	33	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0002	2055	35	24	10	0	0	1	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0003	2055	22	0	2	20	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0004	2055	8	0	1	7	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0005	2055	7	7	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0006	2055	3	3	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0007	2055	3	0	0	2	1	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0008	2055	3	3	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0009	2055	2	2	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0010	2055	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0011	2055	1	0	0	1	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0012	2055	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0013	2055	1	0	0	1	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL3_chr5_147385808_147515068	0/0	c0014	2055	1	1	0	0	0	0	copy fasta	DPYSL3	chr5	147385808	147515068
DPYSL4_chr10_132181948_132210759	0/1	c0001	1719	197	33	35	103	7	18	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0002	1719	79	8	7	59	1	4	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0003	1719	30	8	9	0	2	11	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	1/0	c0004	1719	25	4	9	7	2	2	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0005	1719	15	6	5	1	0	3	copy fasta	DPYSL4	chr10	132181948	132210759