JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DPYSL4_chr10_132181948_132210759	0/0	c0006	1719	13	7	3	1	0	2	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0007	1719	10	2	0	8	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0008	1719	8	5	3	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0009	1719	7	7	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0010	1719	6	4	2	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0011	1719	5	0	0	5	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0012	1719	3	3	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0013	1719	3	3	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0014	1719	2	0	0	0	2	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0015	1719	2	1	0	0	0	1	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0016	1719	2	2	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0017	1719	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0018	1719	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0019	1719	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0020	1719	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0021	1719	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0022	1719	1	0	1	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0023	1719	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0024	1719	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0025	1719	1	1	0	0	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0026	1719	1	0	0	1	0	0	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL4_chr10_132181948_132210759	0/0	c0027	1719	1	0	0	0	0	1	copy fasta	DPYSL4	chr10	132181948	132210759
DPYSL5_chr2_26843132_26955351	1/0	c0001	1695	132	55	33	31	6	6	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/1	c0002	1695	92	29	24	24	6	8	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	c0003	1695	3	0	1	0	2	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	c0004	1695	2	2	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	c0005	1695	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	c0006	1695	1	0	0	1	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYSL5_chr2_26843132_26955351	0/0	c0007	1695	1	1	0	0	0	0	copy fasta	DPYSL5	chr2	26843132	26955351
DPYS_chr8_104374431_104472055	1/0	c0001	1560	230	37	50	100	10	32	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/1	c0002	1560	95	15	16	55	3	5	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0003	1560	12	1	5	2	2	2	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0004	1560	12	12	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0005	1560	6	0	0	6	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0006	1560	5	5	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0007	1560	5	4	1	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0008	1560	4	4	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0009	1560	2	2	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0010	1560	2	0	0	0	1	1	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0011	1560	2	2	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0014	1560	1	0	0	1	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0015	1560	1	0	0	1	0	0	copy fasta	DPYS	chr8	104374431	104472055
DPYS_chr8_104374431_104472055	0/0	c0016	1560	1	1	0	0	0	0	copy fasta	DPYS	chr8	104374431	104472055
DQX1_chr2_74513131_74531231	0/1	c0001	2154	215	63	26	112	2	11	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	1/0	c0002	2154	119	22	39	31	8	18	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0003	2154	7	7	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0004	2154	4	4	0	0	0	0	copy fasta	DQX1	chr2	74513131	74531231
DQX1_chr2_74513131_74531231	0/0	c0005	2154	2	0	0	2	0	0	copy fasta	DQX1	chr2	74513131	74531231