JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELP1_chr9_108862517_108939124	1/0	c0002	3999	77	23	9	24	4	16	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0003	3999	37	2	0	30	2	3	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0004	3999	28	1	4	21	0	2	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0005	3999	15	10	3	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0006	3999	14	14	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0007	3999	14	0	5	8	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0008	3999	13	11	1	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/1	c0009	3999	13	2	3	6	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0010	3999	10	8	2	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0011	3999	9	0	0	9	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0012	3999	6	0	0	6	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0013	3999	5	5	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0014	3999	4	0	2	0	2	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0015	3999	3	0	0	0	0	3	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0016	3999	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0017	3999	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0018	3999	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0019	3999	2	0	1	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0020	3999	2	0	0	2	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0021	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0022	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0023	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0024	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0025	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0026	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0027	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0028	3999	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0029	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0030	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0031	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0032	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0033	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0034	3999	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0035	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0036	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0037	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0038	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0039	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0040	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0041	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0042	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0043	3999	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0044	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0045	3999	1	0	0	1	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0046	3999	1	0	1	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0047	3999	1	1	0	0	0	0	copy fasta	ELP1	chr9	108862517	108939124
ELP1_chr9_108862517_108939124	0/0	c0048	3999	1	0	0	0	0	1	copy fasta	ELP1	chr9	108862517	108939124
ELP2_chr18_36124899_36185557	1/1	c0001	2481	216	40	38	100	9	27	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0002	2481	84	14	23	38	3	6	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0003	2481	36	0	0	35	0	1	copy fasta	ELP2	chr18	36124899	36185557