JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ELP2_chr18_36124899_36185557	0/0	c0004	2481	13	11	0	1	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0005	2481	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0006	2481	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0007	2481	4	3	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0008	2481	4	4	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0009	2481	3	3	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0010	2481	2	2	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0011	2481	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0012	2481	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0013	2481	1	0	1	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0014	2481	1	0	0	0	0	1	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0015	2481	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0016	2481	1	1	0	0	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0017	2471	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP2_chr18_36124899_36185557	0/0	c0018	2481	1	0	0	1	0	0	copy fasta	ELP2	chr18	36124899	36185557
ELP3_chr8_28088139_28196153	1/1	c0001	1644	382	86	75	166	17	36	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	c0002	1644	8	7	1	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	c0003	1644	6	0	0	6	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	c0004	1644	1	1	0	0	0	0	copy fasta	ELP3	chr8	28088139	28196153
ELP3_chr8_28088139_28196153	0/0	c0005	1644	1	0	0	0	1	0	copy fasta	ELP3	chr8	28088139	28196153
ELP4_chr11_31504767_31795324	1/1	c0001	1275	253	62	54	98	6	31	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0002	1275	7	7	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0003	1275	5	5	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0004	1275	1	0	0	0	0	1	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0005	1275	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0006	1275	1	1	0	0	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0007	1275	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP4_chr11_31504767_31795324	0/0	c0008	1275	1	0	0	1	0	0	copy fasta	ELP4	chr11	31504767	31795324
ELP5_chr17_7247215_7264937	1/1	c0001	903	396	80	73	182	17	42	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0002	903	5	5	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0003	903	3	0	0	3	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0004	903	2	0	1	0	1	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0005	903	2	2	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0006	903	1	0	0	1	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0007	903	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0008	903	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP5_chr17_7247215_7264937	0/0	c0009	903	1	1	0	0	0	0	copy fasta	ELP5	chr17	7247215	7264937
ELP6_chr3_47490640_47518712	1/1	c0001	801	372	90	70	162	14	34	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	c0002	801	1	0	1	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELP6_chr3_47490640_47518712	0/0	c0003	801	1	0	1	0	0	0	copy fasta	ELP6	chr3	47490640	47518712
ELSPBP1_chr19_47989632_48030154	0/1	c0001	672	209	34	46	100	7	21	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	1/0	c0002	672	49	16	12	14	1	5	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0003	672	36	0	7	18	4	7	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0004	672	31	9	5	15	1	1	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0005	672	12	12	0	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0006	672	8	6	2	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0007	672	7	5	2	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0008	672	7	2	2	0	3	0	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0009	672	4	0	0	0	0	4	copy fasta	ELSPBP1	chr19	47989632	48030154
ELSPBP1_chr19_47989632_48030154	0/0	c0010	672	3	1	2	0	0	0	copy fasta	ELSPBP1	chr19	47989632	48030154