JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EN1_chr2_118837171_118852648	0/0	c0008	1179	1	0	0	1	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	c0009	1179	1	1	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN2_chr7_155453129_155469831	0/0	c0001	1002	167	11	26	109	4	17	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0002	1002	116	29	31	48	2	6	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0003	1002	98	38	20	25	3	12	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0004	1002	15	3	3	2	1	6	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0005	1002	12	3	2	1	2	4	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0006	1002	11	7	2	1	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0007	1002	4	3	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0008	1002	2	0	2	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0009	1002	2	0	0	2	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0011	1002	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0012	1002	1	1	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0013	1002	1	0	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	c0014	1002	1	0	0	0	0	1	copy fasta	EN2	chr7	155453129	155469831
ENAH_chr1_225481829_225658123	1/1	c0001	1713	262	55	49	113	13	30	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0002	1695	17	6	4	4	1	2	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0003	1713	10	0	1	5	0	4	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0004	1731	8	1	2	4	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0005	1713	3	0	0	3	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0006	1695	2	0	0	1	0	1	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0007	1695	1	0	1	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0008	1713	1	0	0	1	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0009	1688	1	0	1	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0010	1713	1	1	0	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0011	1713	1	1	0	0	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAH_chr1_225481829_225658123	0/0	c0012	1677	1	0	0	1	0	0	copy fasta	ENAH	chr1	225481829	225658123
ENAM_chr4_70623744_70651824	1/1	c0001	3429	310	24	61	182	6	35	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0002	3429	34	24	4	3	0	3	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0003	3429	13	12	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0004	3429	12	12	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0005	3429	11	0	0	11	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0006	3429	5	0	0	5	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0007	3429	4	3	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0008	3429	3	3	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0009	3429	3	0	0	3	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0010	3429	2	2	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0011	3429	2	2	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0012	3429	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0013	3429	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0014	3429	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0015	3429	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0016	3429	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0017	3429	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0018	3429	1	0	0	1	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0019	3429	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0020	3429	1	1	0	0	0	0	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0021	3429	1	0	0	0	0	1	copy fasta	ENAM	chr4	70623744	70651824
ENAM_chr4_70623744_70651824	0/0	c0022	3429	1	0	1	0	0	0	copy fasta	ENAM	chr4	70623744	70651824