JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ENO4_chr10_116844499_116887601	0/0	c0006	1878	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0007	1878	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0008	1878	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0009	1878	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0010	1878	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0011	1878	1	0	1	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	c0012	1878	1	1	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENOPH1_chr4_82425590_82466177	1/1	c0001	786	363	95	63	153	12	38	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	c0002	786	2	1	1	0	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	c0003	786	1	0	0	1	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOSF1_chr18_665318_717630	1/0	c0001	1332	212	45	41	83	10	32	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/1	c0002	1332	64	23	12	16	2	10	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0003	1332	41	3	2	34	0	2	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0004	1332	39	0	3	35	0	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0005	1332	17	0	14	1	1	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0006	1332	12	12	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0007	1332	12	1	0	10	1	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0008	1332	7	0	4	0	3	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0009	991	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0010	1332	2	2	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0011	1332	2	0	0	0	0	2	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0012	1332	1	0	0	0	1	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0013	1332	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0014	1332	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0015	1332	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0016	1332	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0017	1332	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0018	1332	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	c0019	1332	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOX1_chr13_43208130_43791972	0/1	c0001	1932	118	43	23	39	4	8	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	1/0	c0002	1932	49	14	6	24	0	4	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0003	1932	5	4	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0004	1932	4	4	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0005	1932	4	3	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0006	1932	3	3	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0007	1932	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0008	1932	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0009	1932	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0010	1932	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	c0011	1932	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX2_chrX_130617325_130908209	1/1	c0001	1746	148	35	25	63	5	18	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	c0002	1746	3	3	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	c0003	1746	2	0	0	2	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	c0004	1746	1	0	0	1	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENPEP_chr4_110471155_110570285	0/0	c0001	2874	150	29	20	73	8	20	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/1	c0002	2874	85	24	22	25	2	11	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	1/0	c0003	2874	41	10	6	17	1	6	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0004	2874	10	0	0	9	0	1	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0005	2874	6	6	0	0	0	0	copy fasta	ENPEP	chr4	110471155	110570285
ENPEP_chr4_110471155_110570285	0/0	c0006	2874	2	0	1	0	1	0	copy fasta	ENPEP	chr4	110471155	110570285