JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPHX2_chr8_27486143_27550564	0/0	c0020	1668	2	1	0	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0021	1668	1	0	0	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0022	1668	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0023	1668	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0024	1668	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0025	1668	1	0	0	0	0	1	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0026	1668	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0027	1668	1	0	0	0	1	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0028	1668	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0029	1671	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0030	1668	1	0	0	0	0	1	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0031	1668	1	0	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0032	1668	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0033	1668	1	0	1	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0034	1668	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0035	1668	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0036	1668	1	0	0	1	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX2_chr8_27486143_27550564	0/0	c0037	1668	1	1	0	0	0	0	copy fasta	EPHX2	chr8	27486143	27550564
EPHX3_chr19_15221919_15237448	1/1	c0001	1083	365	80	68	157	16	42	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0002	1083	2	0	0	1	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0003	1083	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0004	1083	1	0	1	0	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0005	1083	1	0	0	1	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0006	1083	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0008	1083	1	0	0	0	0	1	copy fasta	EPHX3	chr19	15221919	15237448
EPHX3_chr19_15221919_15237448	0/0	c0009	1083	1	0	1	0	0	0	copy fasta	EPHX3	chr19	15221919	15237448
EPHX4_chr1_92024985_92068538	1/1	c0001	1089	233	85	51	55	12	28	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	c0002	1089	1	0	0	1	0	0	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	c0003	1089	1	0	1	0	0	0	copy fasta	EPHX4	chr1	92024985	92068538
EPHX4_chr1_92024985_92068538	0/0	c0004	1089	1	1	0	0	0	0	copy fasta	EPHX4	chr1	92024985	92068538
EPM2AIP1_chr3_36980043_36998131	1/1	c0001	1824	376	75	66	179	13	41	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0002	1824	11	9	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0003	1824	10	8	2	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0004	1824	3	1	1	0	1	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0005	1824	3	3	0	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0006	1824	1	0	0	0	0	1	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0007	1824	1	0	1	0	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2AIP1_chr3_36980043_36998131	0/0	c0008	1824	1	0	0	1	0	0	copy fasta	EPM2AIP1	chr3	36980043	36998131
EPM2A_chr6_145620305_145740520	0/0	c0001	996	172	63	17	81	4	7	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	1/1	c0002	996	111	19	15	50	6	19	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0003	996	17	0	11	0	0	6	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0004	996	6	0	0	6	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0005	996	4	4	0	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0006	996	3	1	0	0	1	1	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0007	964	1	0	0	0	1	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0008	996	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0009	996	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0010	996	1	1	0	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520
EPM2A_chr6_145620305_145740520	0/0	c0011	996	1	0	1	0	0	0	copy fasta	EPM2A	chr6	145620305	145740520