JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPS8L3_chr1_109745080_109768923	0/0	c0005	1782	31	3	5	23	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0006	1782	19	19	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0007	1782	13	0	2	5	1	5	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0008	1782	6	0	3	2	0	1	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0009	1782	4	2	2	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0010	1782	3	0	1	2	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0011	1782	3	3	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0012	1782	2	2	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0013	1782	2	0	0	2	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0014	1782	2	2	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0016	1782	1	0	1	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0017	1782	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0018	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0019	1782	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0020	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0021	1782	1	0	1	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0022	1782	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0023	1727	1	0	0	0	0	1	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0024	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0025	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0026	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0027	1782	1	0	0	1	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8L3_chr1_109745080_109768923	0/0	c0028	1782	1	1	0	0	0	0	copy fasta	EPS8L3	chr1	109745080	109768923
EPS8_chr12_15615134_15794388	1/1	c0001	2469	51	20	12	14	0	3	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0002	2469	34	29	3	2	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0003	2469	5	5	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0004	2469	4	2	0	2	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0005	2469	2	2	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0006	2469	2	0	0	2	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0007	2469	1	1	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0008	2469	1	0	1	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0009	2469	1	0	0	0	0	1	copy fasta	EPS8	chr12	15615134	15794388
EPS8_chr12_15615134_15794388	0/0	c0010	2469	1	1	0	0	0	0	copy fasta	EPS8	chr12	15615134	15794388
EPSTI1_chr13_42881388_42997241	1/1	c0001	924	169	41	36	63	6	21	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0002	924	159	22	30	87	2	18	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0003	924	4	0	3	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0004	924	4	3	1	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0005	924	3	3	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0006	924	3	3	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0007	924	2	2	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0008	924	2	2	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0009	672	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0010	924	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0011	924	1	0	0	0	0	1	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0012	924	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0013	924	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPSTI1_chr13_42881388_42997241	0/0	c0014	924	1	1	0	0	0	0	copy fasta	EPSTI1	chr13	42881388	42997241
EPX_chr17_58187726_58210174	1/0	c0001	2148	196	19	36	110	9	21	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/1	c0002	2148	69	31	7	21	2	7	copy fasta	EPX	chr17	58187726	58210174