JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERBB2_chr17_39695064_39733658	0/0	c0020	3768	1	0	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0021	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0022	3768	1	0	0	0	1	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0023	3768	1	0	0	0	0	1	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0024	3768	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0025	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0026	3768	1	0	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB3_chr12_56075165_56108505	1/1	c0001	4029	242	70	48	86	9	27	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0002	4029	109	8	30	57	7	7	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0003	4029	15	9	3	0	2	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0004	4029	8	0	0	8	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0005	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0006	4029	1	0	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0007	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0008	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0009	4029	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0010	3973	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0011	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0012	4029	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0013	4029	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0014	4029	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0015	4029	1	0	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0016	4029	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0017	4029	1	0	0	0	0	1	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0018	4029	1	0	1	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0019	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0020	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0021	4029	1	0	0	1	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB3_chr12_56075165_56108505	0/0	c0022	4029	1	1	0	0	0	0	copy fasta	ERBB3	chr12	56075165	56108505
ERBB4_chr2_211370717_212543802	0/0	c0001	3927	45	37	6	0	0	2	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	c0002	3927	9	4	4	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	c0003	3927	1	0	0	0	0	1	copy fasta	ERBB4	chr2	211370717	212543802
ERBB4_chr2_211370717_212543802	0/0	c0004	3927	1	1	0	0	0	0	copy fasta	ERBB4	chr2	211370717	212543802
ERBIN_chr5_65921575_66087546	0/1	c0001	4239	115	35	17	50	3	9	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0002	4239	53	9	8	33	0	3	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0003	4239	46	1	9	32	1	3	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0004	4239	30	0	6	17	2	5	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0005	4239	14	13	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0006	4239	12	10	2	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	1/0	c0007	4239	10	9	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0008	4239	5	0	0	5	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0009	4239	2	0	0	2	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0010	4239	2	0	0	2	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0011	4239	2	2	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0012	4239	2	2	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0013	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0014	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0015	4239	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0016	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0017	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546