JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERBIN_chr5_65921575_66087546	0/0	c0018	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0019	4239	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0020	4239	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0021	4239	1	0	1	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0022	4239	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0023	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0024	4239	1	1	0	0	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERBIN_chr5_65921575_66087546	0/0	c0025	4239	1	0	0	1	0	0	copy fasta	ERBIN	chr5	65921575	66087546
ERC1_chr12_986223_1500931	1/1	c0001	3351	86	19	26	17	11	11	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0002	3351	59	49	9	0	0	1	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0003	3351	4	2	0	0	0	2	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0004	3351	4	0	4	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0005	3351	1	0	0	1	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0006	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0007	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0008	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0009	3351	1	0	0	0	1	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0010	3351	1	0	1	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0011	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0012	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC1_chr12_986223_1500931	0/0	c0013	3351	1	1	0	0	0	0	copy fasta	ERC1	chr12	986223	1500931
ERC2_chr3_55503311_56473467	1/1	c0001	2874	57	28	14	3	2	8	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	c0002	2874	10	9	1	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	c0003	2874	3	0	3	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	c0004	2874	2	2	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	c0005	2874	1	0	0	1	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERC2_chr3_55503311_56473467	0/0	c0006	2874	1	1	0	0	0	0	copy fasta	ERC2	chr3	55503311	56473467
ERCC1_chr19_45402334_45428917	0/0	c0001	894	278	79	44	121	8	26	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	1/1	c0002	894	120	4	28	55	7	24	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0003	894	7	7	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0004	894	6	0	0	6	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0005	894	2	0	0	2	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0006	894	1	0	0	0	1	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0007	894	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0008	894	1	1	0	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0009	894	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0010	894	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0011	894	1	0	1	0	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC1_chr19_45402334_45428917	0/0	c0012	894	1	0	0	1	0	0	copy fasta	ERCC1	chr19	45402334	45428917
ERCC2_chr19_45344837_45375573	0/0	c0001	2283	173	67	20	75	1	10	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	1/1	c0002	2283	136	6	38	71	5	14	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0003	2283	47	12	9	7	8	11	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0004	2283	12	0	3	6	1	2	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0005	2283	7	0	2	5	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0006	2283	7	4	1	0	1	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0007	2283	4	0	0	4	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0008	2283	3	2	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0009	2283	2	0	0	2	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0010	2283	2	0	2	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0011	2283	2	0	0	0	0	2	copy fasta	ERCC2	chr19	45344837	45375573