JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FASN_chr17_82073338_82103236	0/0	c0101	7536	1	0	1	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0102	7536	1	0	0	0	0	1	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0103	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0104	7536	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0105	7536	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0106	7536	1	1	0	0	0	0	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	c0107	7536	1	0	0	1	0	0	copy fasta	FASN	chr17	82073338	82103236
FASTKD1_chr2_169523508_169578865	0/1	c0001	2544	160	27	39	70	5	18	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0002	2544	69	2	6	50	2	9	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	1/0	c0003	2544	59	28	12	5	4	9	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0004	2544	50	12	2	32	1	3	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0005	2544	23	0	0	20	1	2	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0006	2544	21	16	1	0	1	3	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0007	2544	3	3	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0008	2544	3	3	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0009	2544	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0010	2544	1	0	0	1	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0011	2544	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD1_chr2_169523508_169578865	0/0	c0012	2544	1	1	0	0	0	0	copy fasta	FASTKD1	chr2	169523508	169578865
FASTKD2_chr2_206760606_206801189	1/1	c0001	2133	329	63	59	152	15	38	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0002	2133	48	22	2	16	1	7	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0003	2133	7	7	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0004	2133	4	3	1	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0005	2133	2	2	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0006	2133	1	1	0	0	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0007	2133	1	0	0	0	0	1	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0008	2133	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD2_chr2_206760606_206801189	0/0	c0009	2133	1	0	0	1	0	0	copy fasta	FASTKD2	chr2	206760606	206801189
FASTKD3_chr5_7854159_7874031	0/0	c0001	1989	282	71	53	108	14	36	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	1/1	c0002	1989	85	5	9	59	1	9	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0003	1989	75	9	12	52	0	2	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0004	1989	5	0	0	5	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0005	1986	4	1	2	0	0	1	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0006	1989	2	2	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0007	1989	1	0	0	1	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0008	1986	1	0	0	0	1	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0009	1989	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0010	1989	1	0	1	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0011	1989	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0012	1989	1	0	0	1	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0013	1989	1	0	1	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0014	1989	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD3_chr5_7854159_7874031	0/0	c0015	1989	1	1	0	0	0	0	copy fasta	FASTKD3	chr5	7854159	7874031
FASTKD5_chr20_3141519_3164865	1/1	c0001	2295	361	62	73	171	9	44	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0002	2295	12	3	5	0	3	1	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0003	2295	11	11	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0004	2295	8	8	0	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0005	2295	4	3	1	0	0	0	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0006	2295	4	1	0	0	0	3	copy fasta	FASTKD5	chr20	3141519	3164865
FASTKD5_chr20_3141519_3164865	0/0	c0007	2295	3	0	0	3	0	0	copy fasta	FASTKD5	chr20	3141519	3164865