JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXL18_chr7_5470797_5518809	0/0	c0011	2157	2	0	1	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0012	2157	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0013	2157	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0014	2158	2	1	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0015	2157	2	2	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0016	2158	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0017	2158	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0018	2157	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0019	2157	1	0	0	0	0	1	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0020	2157	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0021	2157	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0022	2157	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0023	2157	1	0	0	1	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0024	2157	1	0	1	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0025	2157	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0026	2157	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0027	2158	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0028	2157	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0029	2157	1	0	0	0	1	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL18_chr7_5470797_5518809	0/0	c0030	2157	1	1	0	0	0	0	copy fasta	FBXL18	chr7	5470797	5518809
FBXL19_chr16_30918572_30953783	1/1	c0001	2025	230	81	60	51	12	24	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	c0002	2025	3	0	0	3	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	c0003	2025	2	0	2	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	c0004	2025	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	c0005	2025	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	c0006	2025	1	1	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL20_chr17_39247663_39406626	1/1	c0001	1311	228	79	42	83	12	10	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	c0002	1311	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	c0003	1311	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL22_chr15_63592387_63606241	1/0	c0001	696	181	41	29	86	3	21	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/1	c0002	696	114	36	32	18	10	17	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0003	696	20	5	7	0	5	3	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0004	696	9	9	0	0	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0005	696	4	4	0	0	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0006	696	3	0	0	3	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0007	696	2	0	0	0	0	2	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0008	696	1	0	0	1	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0009	696	1	1	0	0	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	c0010	696	1	0	0	0	0	1	copy fasta	FBXL22	chr15	63592387	63606241
FBXL2_chr3_33272442_33393092	1/1	c0001	1272	337	81	48	161	11	34	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	c0002	1272	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	c0003	1272	1	1	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	c0004	1272	1	0	0	0	1	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL3_chr13_77000260_77032159	1/1	c0001	1287	396	88	69	187	14	36	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	c0002	1287	8	0	0	8	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	c0003	1287	7	6	1	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	c0004	1287	1	0	0	1	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL4_chr6_98863535_98952946	1/1	c0001	1866	351	75	67	170	4	33	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0002	1866	8	3	2	0	2	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	c0003	1866	6	0	6	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946