JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXO17_chr19_38936401_38980742	0/0	c0004	837	4	2	0	0	1	1	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0005	837	2	0	0	2	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0006	837	2	2	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0007	837	2	2	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0008	837	2	2	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0009	837	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0010	837	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0011	837	1	0	1	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0012	837	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	c0013	837	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO21_chr12_117136991_117195470	1/1	c0001	1866	314	53	64	151	13	31	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0002	1866	71	28	4	31	1	7	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0003	1866	8	0	0	8	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0004	1866	6	6	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0005	1866	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0006	1866	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	c0007	1866	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO22_chr15_75898878_75947511	1/1	c0001	1212	378	84	56	182	12	42	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	c0002	1212	2	2	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO24_chr7_100581328_100606117	1/1	c0001	1743	260	47	37	125	13	36	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0002	1743	69	40	19	1	3	6	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0003	1743	3	0	0	3	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0004	1743	3	3	0	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0005	1743	2	2	0	0	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0006	1743	1	0	0	0	0	1	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0007	1754	1	0	0	1	0	0	copy fasta	FBXO24	chr7	100581328	100606117
FBXO24_chr7_100581328_100606117	0/0	c0008	1743	1	0	0	0	0	1	copy fasta	FBXO24	chr7	100581328	100606117
FBXO25_chr8_401958_482967	0/1	c0001	1077	179	78	23	59	4	14	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	1/0	c0002	1077	141	5	38	71	8	18	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0003	1077	53	11	8	26	1	7	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0004	1077	13	0	2	10	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0005	1077	13	0	7	0	1	5	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0006	1077	10	0	0	9	0	1	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO25_chr8_401958_482967	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	FBXO25	chr8	401958	482967
FBXO27_chr19_39019021_39037549	1/1	c0001	852	421	94	76	184	16	49	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	c0002	852	1	0	0	0	0	1	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	c0003	852	1	0	0	1	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO27_chr19_39019021_39037549	0/0	c0004	852	1	0	0	1	0	0	copy fasta	FBXO27	chr19	39019021	39037549
FBXO28_chr1_224109111_224167047	1/1	c0001	1107	369	78	71	168	14	36	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0002	1107	19	18	1	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0003	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0004	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0005	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0006	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0007	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	c0008	1107	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO2_chr1_11643387_11659429	0/1	c0001	894	154	63	26	44	2	18	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	1/0	c0002	891	136	15	32	58	12	18	copy fasta	FBXO2	chr1	11643387	11659429